PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do010311.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

CPP

Protein Properties

Length: 1070aa MW: 116375 Da PI: 7.1595

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do010311.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.6	6e-14	764	801	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YC Cfa+g++Cse+C Ce C Nk Do010311.1 764 CKTCSCKKSKCLKLYCVCFASGSHCSESCGCEPCLNKP 801 89**********************************96 PP
2	TCR	45.6	1.4e-14	840	875	4	39
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++C+Ckks ClkkYC+C++ g+ Cs +CkCedC+N Do010311.1 840 RKCTCKKSGCLKKYCDCYQGGAGCSINCKCEDCRNP 875 79********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	7.0E-10	762	803	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	27.312	763	877	IPR005172	CRC domain
Pfam	PF03638	7.3E-10	765	800	IPR005172	CRC domain
SMART	SM01114	2.0E-15	837	878	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.8E-10	840	874	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1070 aa Download sequence Send to blast
MDTPDRPRAA AAGGFEDSPV FNFINNLSPI PPPKPSDTAH NLQLFKSSDL APVSSIFASP 60 HVNPAKESKI LIRDDSVQLP QDLHSPNCVR TRVGSTITFR MIRCSDIVSE NCNITCQLNE 120 ASIDSSDQTS NSKSQLPQST QNGVVSVESD KDQCADVKTD LTISQECTSL ESMNLDESGP 180 DKMDSSHSGV DVHGNQLSEQ NKDEPAAYNG DYMITNQPSS DTLTSGLPFG TETQSVNDTQ 240 KGENSYSCKS LLNEESSDYY IQNSAHEPHL YWTGAVEGAA VNYTPQVLPG ALQSQLMPCN 300 KLNEPRDYMP TEQNALSQNL RGMRRRSLFN EKAGASNKGV DKSSDRHSVN STPKCKTISG 360 DNSKPLRTPP CALPGIGLHL NTLAAIPKEK IVSQEIQSTI NESTNLPCPA GSSSLPSEQN 420 IIIDDFVQTT DVVSSEPSSQ GSPKKKRHKF GNGDGTSCKR CSCKKSKCLK LNHVLHFAIH 480 KKATIFLRAF FNLIQGIAAL EEPNQAPEGT NACVKEEKIE IDKQLVIYQA TDLAPAGNVL 540 TTPSMVECRF ECQLSYLQVF ASGRVDLHAS QHELPSMSKT ISSKGSKRKP NRIQGGNGRS 600 EPSSCHARIA KTPFHQRLAS CLPSPPAPPP RLSRSLRFVA TASPTPPQPP IGAPPPAPDP 660 MEVEEEPPKL PQPEPAGSEP DDARNTSPPP PPPPPPAPTP VPAPVPAPAA EAYAASPISA 720 AAAAVSPPPA EANGNSDRKK KSVRRLPFPF SAKFWRKADD GEGCKTCSCK KSKCLKLYCV 780 CFASGSHCSE SCGCEPCLNK PMQGAPRAAP VLPLKPVQTL ETGQDSMEQL IRSPMDLIRR 840 KCTCKKSGCL KKYCDCYQGG AGCSINCKCE DCRNPFGRKV GVILDGKNAL AAPVLNERNG 900 AEVDSSDDED DYYMNRQLSP IPPSPVSRES SFQQETLVGV EVQTMNGHLY PKPLTQVRPE 960 PPSWQLSRRP VEEARGEQWR FSRRPSEDGT CDAMEAHAMA QRDNKKPETH VDRYSIPRCI 1020 EVMSAMADLS PIEKSLAPDV FLDPSNREIF LSLSVDIRPI WLRRKMKSLV

Sequence ? help Back to Top

Protein Sequence Length: 1070 aa Download sequence Send to blast

MDTPDRPRAA AAGGFEDSPV FNFINNLSPI PPPKPSDTAH NLQLFKSSDL APVSSIFASP  60
HVNPAKESKI LIRDDSVQLP QDLHSPNCVR TRVGSTITFR MIRCSDIVSE NCNITCQLNE  120
ASIDSSDQTS NSKSQLPQST QNGVVSVESD KDQCADVKTD LTISQECTSL ESMNLDESGP  180
DKMDSSHSGV DVHGNQLSEQ NKDEPAAYNG DYMITNQPSS DTLTSGLPFG TETQSVNDTQ  240
KGENSYSCKS LLNEESSDYY IQNSAHEPHL YWTGAVEGAA VNYTPQVLPG ALQSQLMPCN  300
KLNEPRDYMP TEQNALSQNL RGMRRRSLFN EKAGASNKGV DKSSDRHSVN STPKCKTISG  360
DNSKPLRTPP CALPGIGLHL NTLAAIPKEK IVSQEIQSTI NESTNLPCPA GSSSLPSEQN  420
IIIDDFVQTT DVVSSEPSSQ GSPKKKRHKF GNGDGTSCKR CSCKKSKCLK LNHVLHFAIH  480
KKATIFLRAF FNLIQGIAAL EEPNQAPEGT NACVKEEKIE IDKQLVIYQA TDLAPAGNVL  540
TTPSMVECRF ECQLSYLQVF ASGRVDLHAS QHELPSMSKT ISSKGSKRKP NRIQGGNGRS  600
EPSSCHARIA KTPFHQRLAS CLPSPPAPPP RLSRSLRFVA TASPTPPQPP IGAPPPAPDP  660
MEVEEEPPKL PQPEPAGSEP DDARNTSPPP PPPPPPAPTP VPAPVPAPAA EAYAASPISA  720
AAAAVSPPPA EANGNSDRKK KSVRRLPFPF SAKFWRKADD GEGCKTCSCK KSKCLKLYCV  780
CFASGSHCSE SCGCEPCLNK PMQGAPRAAP VLPLKPVQTL ETGQDSMEQL IRSPMDLIRR  840
KCTCKKSGCL KKYCDCYQGG AGCSINCKCE DCRNPFGRKV GVILDGKNAL AAPVLNERNG  900
AEVDSSDDED DYYMNRQLSP IPPSPVSRES SFQQETLVGV EVQTMNGHLY PKPLTQVRPE  960
PPSWQLSRRP VEEARGEQWR FSRRPSEDGT CDAMEAHAMA QRDNKKPETH VDRYSIPRCI  1020
EVMSAMADLS PIEKSLAPDV FLDPSNREIF LSLSVDIRPI WLRRKMKSLV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do010311.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004963116.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A368QN90	0.0	A0A368QN90_SETIT; Uncharacterized protein
STRING	Si021159m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9610	28	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	7e-18	TESMIN/TSO1-like CXC 2