PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 21924.9 Da PI: 6.9126 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.6 | 9.3e-43 | 36 | 135 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA ar+rdPvyG++g i +lq+q++ lka+la++++ Do010238.1 36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQDLPEEHRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNDLKAQLARAHA 134 7***********************************************************************************************998 PP DUF260 100 e 100 e Do010238.1 135 E 135 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.03 | 35 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-42 | 36 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MASSSSDTAC AALQHAGAST TPPTSPQQQP AVVLSPCAAC KILRRRCVDR CVLAPYFPPT 60 EPHKFATAHR VFGASNIIKL LQDLPEEHRA DAVSSMVYEA SARIRDPVYG CAGAICQLQK 120 QVNDLKAQLA RAHAELAGAR AQHAHLLALL CVEVAAASPA YCAADYPSSQ LAATAPAAQA 180 DALYVVDGGS GLHQLQASAV SWADEPLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-44 | 35 | 136 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-44 | 35 | 136 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010238.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953937 | 5e-84 | EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004960340.1 | 1e-117 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 2e-62 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A1E5VX41 | 1e-148 | A0A1E5VX41_9POAL; LOB domain-containing protein 1 | ||||
STRING | Si024430m | 1e-116 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-54 | LOB domain-containing protein 1 |