PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | BES1 | ||||||||
Protein Properties | Length: 176aa MW: 19100.2 Da PI: 8.1027 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 132.4 | 5e-41 | 50 | 162 | 2 | 115 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssasaspesslqsslk 99 +s r+pt +ErEnn++RERrRR++aa+iyaGLRa+++y lpk+aD+n+Vl+ALc+eAG+ v+dDG++ r +g a+ +s++ + ss + +++ Do010216.1 50 TSLRHPTPRERENNRQRERRRRQVAARIYAGLRAHAGYTLPKHADQNDVLRALCAEAGYHVDDDGNVTRlQGVVDG--AAGPSCSSDHPKPSSHSGTTE 146 789******************************************************************4444444..445555555444444455677 PP DUF822 100 ssalaspvesysaspk 115 + +l+ p ++ + ++ Do010216.1 147 AATLQQPEQQEEEEEE 162 7777777766665554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.2E-31 | 52 | 153 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MEVGAGREEG EAAAAAMKAV AVVAGRRGCI RSTQGPWTVR RRGRGGGLTT SLRHPTPRER 60 ENNRQRERRR RQVAARIYAG LRAHAGYTLP KHADQNDVLR ALCAEAGYHV DDDGNVTRLQ 120 GVVDGAAGPS CSSDHPKPSS HSGTTEAATL QQPEQQEEEE EEAKLSLELT LSFAYM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 6e-12 | 73 | 118 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 6e-12 | 73 | 118 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 6e-12 | 73 | 118 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 6e-12 | 73 | 118 | 392 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010216.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947756 | 1e-117 | EU947756.1 Zea mays clone 356679 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971713.1 | 1e-80 | protein BZR1 homolog 3-like | ||||
TrEMBL | A0A1E5VUH4 | 1e-125 | A0A1E5VUH4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb00361.1.p | 2e-75 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.3 | 6e-15 | BES1 family protein |