PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do010118.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 432aa MW: 46164.8 Da PI: 8.1991

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do010118.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.4	8.8e-40	101	161	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Do010118.1 101 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 161 7899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	97	150	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	103	159	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.929	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MAACRVGGGG GDCLIKLFGK TIPVPEAAAA ASVAEADNKD IQQSDSSTTE LKGQENTLQD 60 STGSPPQQEV ADTEDSSAAK NSSGDQQQGE TANQKEKLKK PDKILPCPRC NSMDTKFCYY 120 NNYNINQPRH FCKNCQRYWT AGGAMRNVPV GAGRRKSKSA SAASHFLQRV RAALPIDPLC 180 TAAKTNGTVL SFGSDMSLDL TEQMKHLKEK LVPITRIKSS DDRSVGSCTE GSAKGEDSNQ 240 MNQKEKVIAD KSANVAQHPC MNGVTMWPFS CAPPLASYTS GIAIPFYPAA AAYWGCMVPG 300 AWNTAPWQPH SQSESASSLS TASPASTKSN CFTPGKRPRD SDEGDTMPTG KVWVPKTIRI 360 DDADEVARSS ILSLIGINGD KAGKDRRGCK LASVFEQKEE AKTATHAVIN SLPFLQGNPA 420 ALSRSLTFQE GS

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MAACRVGGGG GDCLIKLFGK TIPVPEAAAA ASVAEADNKD IQQSDSSTTE LKGQENTLQD  60
STGSPPQQEV ADTEDSSAAK NSSGDQQQGE TANQKEKLKK PDKILPCPRC NSMDTKFCYY  120
NNYNINQPRH FCKNCQRYWT AGGAMRNVPV GAGRRKSKSA SAASHFLQRV RAALPIDPLC  180
TAAKTNGTVL SFGSDMSLDL TEQMKHLKEK LVPITRIKSS DDRSVGSCTE GSAKGEDSNQ  240
MNQKEKVIAD KSANVAQHPC MNGVTMWPFS CAPPLASYTS GIAIPFYPAA AAYWGCMVPG  300
AWNTAPWQPH SQSESASSLS TASPASTKSN CFTPGKRPRD SDEGDTMPTG KVWVPKTIRI  360
DDADEVARSS ILSLIGINGD KAGKDRRGCK LASVFEQKEE AKTATHAVIN SLPFLQGNPA  420
ALSRSLTFQE GS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do010118.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985552.1	0.0	cyclic dof factor 1
TrEMBL	A0A1E5VWB7	0.0	A0A1E5VWB7_9POAL; Cyclic dof factor 2
STRING	Pavir.Ia04317.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-53	cycling DOF factor 2