PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010032.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 298aa    MW: 31366.5 Da    PI: 8.5072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010032.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-12112160355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +ah   Er RR+r+++ f++L  llP+ +     +K++Ka+ + ++++YIk L+
  Do010032.1 112 KAHIVTERERRRRMKDLFSNLHALLPHvP-----EKVDKATLVGETIDYIKALE 160
                 5899***********************77.....9****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.208109159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-13112169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-12112161No hitNo description
PfamPF000109.2E-10112160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-14113172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-7115165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAQDGPHDQQ DTDSSDERSF APPMTLTFLS SVEKDNGGSR IGSPAGMDAS KGKDVVPNGT  60
QGGEHGLASG GKANVGRFKG KHSTVGGAAA DTAGDGFPNG KSSLAADDGD LKAHIVTERE  120
RRRRMKDLFS NLHALLPHVP EKVDKATLVG ETIDYIKALE QTKIWMEKRK QQQALARQAA  180
AEAAAVSSLS VPHTAQGLAA MLDNRGPVPQ QQPLAMAAAA APPLAAAMGP DGFQTWSAPN  240
VVLSVLNDKA VINMCLPRQP RILTLVMSVL NKHGIDVITA HVVADGARSF LTIYTRVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952702.11e-142transcription factor bHLH95
TrEMBLA0A1E5VW700.0A0A1E5VW70_9POAL; Uncharacterized protein
STRINGSi017798m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-16bHLH family protein