PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do009957.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 360aa MW: 40564.4 Da PI: 6.1932 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.9 | 2.3e-20 | 113 | 220 | 1 | 97 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkatg 87 lp+G++F+P+d+el+++ L+k+ ++ ++++ ++e +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++tg Do009957.1 113 LPKGVKFDPSDQELLWHLLAKHGKSGIkphpfIDEFIPtVEEDeGICYTHPQKLP-GVKQNGSVSHFFHRTFKAYNTGTRKRRKINtedlaDVRWHKTG 210 799************998888755544455443332222333336**********.667778899******************74444666899***** PP NAM 88 kdkevlskkg 97 k+k+v ++ + Do009957.1 211 KTKPVNNNCE 220 *****98644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53448 | 3.66E-5 | 12 | 64 | IPR029044 | Nucleotide-diphospho-sugar transferases |
SuperFamily | SSF101941 | 2.48E-21 | 97 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.383 | 113 | 280 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-5 | 114 | 217 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGRTAHRYPN PTHRPPLPGF CRGLHAGAVS LLHWSGKGKP WDRLDVGRPC PLDAVWAKTT 60 WIIDSQRFAT KIKNASGSSD PSKQKWMSNP SKECPKCSHV IDNSDVVHQW PGLPKGVKFD 120 PSDQELLWHL LAKHGKSGIK PHPFIDEFIP TVEEDEGICY THPQKLPGVK QNGSVSHFFH 180 RTFKAYNTGT RKRRKINTED LADVRWHKTG KTKPVNNNCE IKIEENAAEE TFVPPPSEKP 240 EDGDNPQSQD PKLWEGDSQF ELLDSQQLAE GLAMCDEFLL SQSQTSCGGG DEPRAIKPRL 300 AVYAQLPAED FKKDLEECQW LEPSNDVNLE LDNTTEFRLS QIDFSQDSFT TWAGGKMIDD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do009957.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055862 | 0.0 | BT055862.1 Zea mays full-length cDNA clone ZM_BFb0341H11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813541.1 | 1e-107 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Swissprot | Q6NQK2 | 3e-79 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A1E5VWK7 | 0.0 | A0A1E5VWK7_9POAL; NAC domain-containing protein 8 | ||||
STRING | Pavir.Da01643.1.p | 1e-106 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-81 | NAC family protein |