PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009801.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 509aa    MW: 52369.5 Da    PI: 7.1801
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009801.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.5e-30239297259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed++v+++tYeg+Hnh+
  Do009801.1 239 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtACPVRKQVQRCAEDKTVLITTYEGTHNHQ 297
                 7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-33223299IPR003657WRKY domain
SuperFamilySSF1182903.14E-27231299IPR003657WRKY domain
PROSITE profilePS5081128.552233299IPR003657WRKY domain
SMARTSM007743.2E-35238298IPR003657WRKY domain
PfamPF031066.0E-26240297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MILAAHGDRA TFGGRRSEIK EVDFFSTGGA RRRNVDEDGD DGGDGSRDAG ALGRGNTTVN  60
TALDLLTTAA GTSVNGGEGT AAGPASDHKE VATVEGELRQ AGEENRRLRR MLDDLTRSYS  120
ALYHQFVQAQ QQQQASGAAN LMMLPATMPA GLQFMDPRMA PAIRAAAPAA SLDGDKGDSD  180
VGSGSGGEAD QNNGRSVQQD GTGTPERGEN AERAAAAAEA PLRRARVSVR ARSEAPMISD  240
GCQWRKYGQK MAKGNPCPRA YYRCTMATAC PVRKQVQRCA EDKTVLITTY EGTHNHQLPP  300
AAAAMAKTTS AAAAMLLSGP AASRDIGALF AGHHIAAPAP LFHQYPYASA AMGATLSASA  360
PFPTITLDLT HSPPASAAGL LQHRPPTAVP AMPFPLYGFP AAAHRPAVPP PQPPTVSSLG  420
MMDGRNRLAL ETMTAAITSD PNFTTALAAA LSTIIAGGAE AAPRVGAGDA AGDGNGSGGT  480
EPAAATAAAA GARETALHAL LQRLHDSRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22225301176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009801.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432751e-43AK243275.1 Oryza sativa Japonica Group cDNA, clone: J100050A06, full insert sequence.
GenBankAP0024801e-43AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149571e-43AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-43CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699836.10.0probable WRKY transcription factor 47
TrEMBLA0A1E5W7H00.0A0A1E5W7H0_9POAL; WRKY transcription factor 6
STRINGPavir.J02788.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-47WRKY family protein