PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009786.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CO-like
Protein Properties Length: 329aa    MW: 35116.2 Da    PI: 5.8578
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009786.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.75.6e-0959103341
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                  + C+ +e+ +++  C+ +   lC++C  e+H+       H++vp
  Do009786.1  59 VWLCEVCEHAPATVTCRADAAALCASCDAEIHSAnplarrHERVP 103
                 679*****************************6689999999998 PP
2CCT67.14.7e-23236279144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Do009786.1 236 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 279
                 9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.80857104IPR000315B-box-type zinc finger
SMARTSM003361.2E-1557104IPR000315B-box-type zinc finger
PfamPF006432.7E-759103IPR000315B-box-type zinc finger
CDDcd000214.98E-960104No hitNo description
PfamPF062039.3E-18236278IPR010402CCT domain
PROSITE profilePS5101716.876236278IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEGDEKSAVG ALAYWGLSAR ARAACRAEAA RLCCRADAAF PCAGCDARAQ GAGSRHARVW  60
LCEVCEHAPA TVTCRADAAA LCASCDAEIH SANPLARRHE RVPMAPFFGA LADAPKPFAS  120
SAVVPKAADD DGSNEAEAAS WLLPEPDHQH KEGPTTEVFF ADSDPYLDLD FARSMDDIKA  180
IGVQNGQAEL DLSGAKLFYS DHSMNHSVSS SEAAVVPDSA AGAAPVVPVV SRGLEREARL  240
MRYREKRKSR RFEKTIRYAS RKAYAETRPR IKGRFAKRTR GSGAADGEDP LEEHEEAELY  300
SSAATAVAAL MAPRGADADY GVDGVVPTY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009786.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279840.0KJ727984.1 Zea mays clone pUT6100 C2C2-CO-like transcription factor (COL7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825843.10.0zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK533e-69COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A1E5UW040.0A0A1E5UW04_9POAL; Uncharacterized protein
STRINGAC233888.1_FGP0021e-179(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.12e-48CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]