PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do009592.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 20904.8 Da PI: 8.3704 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.8 | 4.4e-44 | 31 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C++apyfp +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq+e l+a+lal+++ Do009592.1 31 PCAACKLLRRRCAAGCIFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQVEALQAQLALAQA 129 7***********************************************************************************************998 PP DUF260 100 e 100 e Do009592.1 130 E 130 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.803 | 30 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-43 | 31 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRDAVAVAVA VPGVARAGGG GGGGAASASA PCAACKLLRR RCAAGCIFAP YFPPGEPHKF 60 ANVHKVFGAS NVSKLLQEIP VQHRGDAVSS LVYEANARVR DPVYGCVGAI SSLQQQVEAL 120 QAQLALAQAE MVRLKMSNDY IVHRLKASRN GGGGSSYTGS PSSMSSPKTA EPEAHCKATP 180 EMLDMVVDQP VMDDAQFWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-50 | 28 | 133 | 8 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-50 | 28 | 133 | 8 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do009592.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069911 | 0.0 | BT069911.1 Zea mays full-length cDNA clone ZM_BFb0321D10 mRNA, complete cds. | |||
GenBank | KJ727650 | 0.0 | KJ727650.1 Zea mays clone pUT5577 LOB transcription factor (LOB19) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982247.1 | 3e-94 | LOB domain-containing protein 4 | ||||
Swissprot | Q8LBW3 | 2e-57 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1E5WDF9 | 1e-144 | A0A1E5WDF9_9POAL; LOB domain-containing protein 4 | ||||
STRING | Pavir.Ia01095.1.p | 5e-94 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 8e-37 | LOB domain-containing protein 4 |
Publications ? help Back to Top | |||
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