PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009574.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 368aa    MW: 38663.9 Da    PI: 9.4671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009574.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13121171255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++h ++Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Do009574.1 121 KMSHIAVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 171
                 789*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.97E-14117175No hitNo description
SuperFamilySSF474591.57E-17119194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.497119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-11121171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-13121182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-12125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGEGLCELLV DDHCELRQLS GAEDLFSILE TWEECMNGAG GGRGGGGGGS SAAMPAYSQS  60
STGGSSESAA VGARPTTGNS RRRSDDDEKG VGRGAPVKKK QKGSTAVVVA QDAAADEGAA  120
KMSHIAVERN RRKQMNEHLT VLRSLMPCFY VKRGDQASII GGVVDYIKEL QQVLRSLEAK  180
KHRKAYAEQV LSPRPAVSAP SPRSLIKSTP PLSPRVAVPI SPRTPTPGSP YKPFGGAAGT  240
GSRLPHPAAA AYMVSPAMTP TTSSSSSYSH DQQHYPTRQP YLPTLDSLVT ELAAQAAGRP  300
PAAGLTLPDV KVEFAGPNLV LKTVSHRAPG QALKIIAALE SLSLEILHVS VSTVNDTMVH  360
SFTIKVQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14048GGRGGGGGG
280101RRRSDDDEKGVGRGAPVKKKQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0615851e-102BT061585.1 Zea mays full-length cDNA clone ZM_BFb0161H07 mRNA, complete cds.
GenBankKJ7268671e-102KJ726867.1 Zea mays clone pUT3408 bHLH transcription factor (bHLH139) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.10.0transcription factor SPEECHLESS-like
TrEMBLA0A1E5UI430.0A0A1E5UI43_9POAL; Transcription factor SPEECHLESS
STRINGPavir.Ab01030.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-44bHLH family protein