PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do009553.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 391aa MW: 39860.6 Da PI: 4.4924 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.9 | 6.6e-07 | 333 | 357 | 7 | 30 |
HHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 7 erErrRRdriNsafeeLrellPk.a 30 ++ErrRR+++N+++ Lr+++Pk + Do009553.1 333 MAERRRRKKLNDRLYMLRSVVPKiS 357 79********************944 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.09E-6 | 324 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-4 | 332 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-6 | 333 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-5 | 333 | 359 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MLPPFGANPL WAQEDCDPQQ QQHAPPSTPM GLGQGLEQQN LLALANAAAL GGGVFSTPSV 60 LDDDWYFNSA AGAGAQGSLL MAPPGQGSGL SLGAGSSQIF SLFNMGGVAP YDVHGFDLGL 120 SGGGGVSGGE LVSFAGAGSA SNSASLPLIS AGNAGFLGTF GGFGTAPAQM PEFAGLGGFD 180 MFNNGAGSTS AVLPPASAPL TAPFSARGKA AVLRPLEIFP PVGAQPTLFQ KRALRRNAGE 240 EDDDKKRKAE VALAAEAGAS SAGGGDTVLD DIDDDDGGSI DASGLNYDSE DARGVEESGK 300 KDEKDSNANS TVTAGGAGDG KGKRKGLPAK NLMAERRRRK KLNDRLYMLR SVVPKISKIC 360 ASQMQSFPPE WQTCSEDAMA IALLMVPTYM V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 322 | 340 | KRKGLPAKNLMAERRRRKK |
2 | 334 | 341 | ERRRRKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do009553.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826991.1 | 1e-144 | transcription factor ICE1-like | ||||
TrEMBL | A0A1E5UQC7 | 0.0 | A0A1E5UQC7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha01426.1.p | 1e-137 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1646 | 37 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 5e-19 | bHLH family protein |