PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do009524.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 293aa MW: 31475.6 Da PI: 6.1731 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.6 | 1.5e-15 | 126 | 172 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+Lq Do009524.1 126 DHIMAERKRREKINTRFVELSTVIPGL-----KKMDKATILSDATRYVKELQ 172 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.025 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-17 | 126 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-19 | 126 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-13 | 126 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.94E-17 | 127 | 176 | No hit | No description |
SMART | SM00353 | 1.8E-16 | 128 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MEDTSQFINW ATNPGAAADH EFSEAAFPSL QALREASHAA EMVQELIAGV HAPNSWSSDN 60 GDGAANNNLP ASWNFGATSA QQPGSNGMME APAASGLPDL VYEPPPTRRA GGLRSMGSMS 120 ASYAQDHIMA ERKRREKINT RFVELSTVIP GLKKMDKATI LSDATRYVKE LQEKLKDLEA 180 GGSGGRSIET RLVLVKRPYL HAAADDGSPL LSSASPGTPT AARKELPEIE VRFSEKSVMV 240 RVHCENSKGV AVKVLTEIEK LQLTIIHANV MPFLACSLII DITAKASFSS PFD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 135 | ERKRRE |
2 | 131 | 136 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do009524.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364667 | 7e-47 | AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986324.1 | 1e-154 | transcription factor bHLH25 | ||||
TrEMBL | A0A1E5VY27 | 0.0 | A0A1E5VY27_9POAL; Transcription factor bHLH25 | ||||
STRING | Si038721m | 1e-157 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-39 | bHLH family protein |