PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009523.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 270aa    MW: 29881.7 Da    PI: 5.7584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009523.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1377121655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +Er RR+++N+++ +Lr+++P+      +K++Ka+i + A+eYI++Lq
  Do009523.1  77 IVMERDRRRKLNEKLYTLRSVVPNI-----TKMDKASIIKDAIEYIQQLQ 121
                 579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.85971120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1775135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.76E-1475125No hitNo description
Gene3DG3DSA:4.10.280.106.6E-1777136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1677126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1177121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDAEMGDSYW EETQRYLEYE ELRYEYDRRA AGDEDAISCY DSSSPDGSNS HSSSAPAGDI  60
KGAGAGRTAA GGGNKNIVME RDRRRKLNEK LYTLRSVVPN ITKMDKASII KDAIEYIQQL  120
QAEERQVLQE VRALESTAGG AHHQEEYCYE YDEGLLLQAE RTKKLKRAQS VPSVAGHGGA  180
PPPPVEVLEL RVSEVGDRVL VVSVTCGKRR DAMARVCRAI EELRLRVITA NITSVAGCLM  240
HTVFVEVRPS PPAAATRLGL FFVFLRSSEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009523.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0852542e-80BT085254.1 Zea mays full-length cDNA clone ZM_BFb0344G23 mRNA, complete cds.
GenBankKJ7279672e-80KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975234.11e-122transcription factor bHLH35
TrEMBLA0A1E5WJM00.0A0A1E5WJM0_9POAL; Transcription factor bHLH35
STRINGSi010812m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.46e-49bHLH family protein