PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009506.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 590aa    MW: 62939.7 Da    PI: 9.1992
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009506.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07105130227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+ C  +     Ck+G++C+FaHg+
  Do009506.1 105 KTRMCTKYNTAEGCKFGEKCHFAHGE 130
                 9***********************96 PP
2zf-CCCH361.1e-11267292127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ykt+lC +f + GtC +G+rC+FaHg+
  Do009506.1 267 YKTKLCENFVK-GTCTFGERCHFAHGM 292
                 9**********.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.8E-73562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3243765IPR000571Zinc finger, CCCH-type
SMARTSM003564.13764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-53862IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45103131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-7103134IPR000571Zinc finger, CCCH-type
SMARTSM003560.27103130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-12105135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.101.4E-14170240IPR004088K Homology domain, type 1
SMARTSM003229.4E-11170240IPR004087K Homology domain
PROSITE profilePS5008414.257171235IPR004088K Homology domain, type 1
SuperFamilySSF547912.05E-14173264IPR004088K Homology domain, type 1
PfamPF000132.0E-10173236IPR004088K Homology domain, type 1
CDDcd001052.65E-13173235No hitNo description
Gene3DG3DSA:4.10.1000.103.3E-12265292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-8265292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.708266293IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-8266292IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9267292IPR000571Zinc finger, CCCH-type
PfamPF047558.9E-8378563IPR006843Plastid lipid-associated protein/fibrillin conserved domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009534Cellular Componentchloroplast thylakoid
GO:0010287Cellular Componentplastoglobule
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MEGAAAARKR SRPETANGAA AGGKRSKETE SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF  60
LHFVPGGYPA VAKMLNLGSP AVSASARAPV DHAAVANSHP ASTGKTRMCT KYNTAEGCKF  120
GEKCHFAHGE RELGKPAYMS YEGPMGGRFG GRPEPPPPVA IGPPAGNFGA SATAKISVDA  180
SLAGGIIGKG GVNTKQICRV TGVKLSIRDH ESDPNLKNIE LEGNFDQIKQ ASNMVSDLIA  240
SISASMPPKN PAPAGGRGGA PGGRSNYKTK LCENFVKGTC TFGERCHFAH GMAATVALTP  300
ASPALLPSFR GRRDGWVRLS PPRRPRYSAG RCRATAQSFQ GGAAASYARE MERLSAKESL  360
LLAFKDAGGF EALVSGKTTE MQRIDVNERI VGLERLNPTL RPTTSPFLEG RWNFEWFGDS  420
SPGAFAARLL FERSPTTVAH FMGLDVLIKD GYSKLSSNLE FLNAIKSKFL LTTQLSVEGP  480
IRMKEEYIQA LIEIPKISEE TLPEQLKGLL GQTAGALQQL PSPIRDAVAE GLKLPLSGTF  540
QRLFMISYLD EEILIIRDAA GAPDVLTRLE GPQPNPIDGT ADAMISEYES
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9594630.0EU959463.1 Zea mays clone 218231 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822782.10.0probable plastid-lipid-associated protein 13, chloroplastic isoform X1
TrEMBLA0A1E5VYA00.0A0A1E5VYA0_9POAL; Zinc finger CCCH domain-containing protein 31
STRINGGRMZM2G371944_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP998022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-49C3H family protein