PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do009463.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bZIP | ||||||||
Protein Properties | Length: 197aa MW: 21537.7 Da PI: 8.6888 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.6 | 1.2e-12 | 74 | 126 | 1 | 53 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 e++l+r+rrk +NR++ArrsR++K++++eeL+ ++ L ae ++L +l+ l Do009463.1 74 EERLRRQRRKVSNRLSARRSREKKQQRLEELRAAAAGLRAEKQQLEARLQALA 126 789**********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-8 | 71 | 126 | No hit | No description |
Pfam | PF00170 | 3.3E-8 | 74 | 126 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.0E-7 | 74 | 138 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.829 | 76 | 128 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.25E-7 | 77 | 127 | No hit | No description |
CDD | cd14702 | 3.81E-10 | 79 | 127 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 81 | 96 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MLSAQEALDL DFAAASSGCG MGMDIMTCGF TPWGPESCPT LDQVMASGTR TAAPAVQEEV 60 EEAEAAVAEH EEEEERLRRQ RRKVSNRLSA RRSREKKQQR LEELRAAAAG LRAEKQQLEA 120 RLQALARNGL VARCQNARLH AEAAALERRL RDARRLLALR RLAQQVLPMP PTMMPLQPQA 180 AGVAPSAALP GFASLMT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do009463.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957676 | 1e-93 | EU957676.1 Zea mays clone 1603335 ocs element-binding factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466386.1 | 1e-56 | DNA-binding protein EMBP-1 | ||||
TrEMBL | A0A1E5WDB0 | 1e-134 | A0A1E5WDB0_9POAL; Uncharacterized protein | ||||
STRING | Sb01g006850.1 | 4e-56 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13845 | 24 | 29 |