PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do009343.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bZIP

Protein Properties

Length: 589aa MW: 64216.6 Da PI: 6.7662

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do009343.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.9	1.4e-10	245	272	7	34
HHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeek 34 err+++NReAAr+sR+RKka++++Le+ Do009343.1 245 ERRLAQNREAARKSRLRKKAYVQQLETS 272 8************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.1E-5	239	297	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-7	244	287	No hit	No description
PROSITE profile	PS50217	8.519	245	285	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.6E-7	245	273	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.1E-7	245	288	No hit	No description
PROSITE pattern	PS00036	0	246	261	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.1E-30	360	435	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MVHGEESSWR MERAALPLNQ ALAYGVQAHH TAAAPPPSCF LDFQPAAAAA AYFGFGELEE 60 ALIHGGGGGA SASAGVDPGV IIKGDVATAQ TKTAAAGYIA GGGSGRPPTL EIFPSWPMRH 120 QQQLHSGNSQ SVGSTTDSSS AQNTMSQMEL VSPASPAPRQ EVMMVTTDDY SYKPGLASAP 180 AAAAPPPSFQ QQHHHPLPLH LHGGGDHDKR KQGSTRKDGK LADAKVGYLL LLLLPDSITV 240 PAFTERRLAQ NREAARKSRL RKKAYVQQLE TSRIRLQQVE HELQRARSQV CCSPNSETPS 300 DDRLIMHWMR VRIVQSLICH GIAVVQGLFV GGCSAGGDMS SGAAMFDMEY ARWLDDDSKQ 360 LAELRGGLQA HLLDGNLGLI VDECMQHYDE LFQLKAALAR ADVFHLLTGS WATPAERCFF 420 WMGGFRPSEL LKILIPQLDP LTEQQLLGIC NLQQSSEQAE EALAQGLHQL HQSLADTVAA 480 GTLNDGAAAP NYMSLMAVAL EKLASLESFY QQADNLRQQT LHQMRRILTT RQAARCFLSI 540 GEYYRRLRAL SNLWASRPRD DFIGTESLSP TATELQVMHQ QQQNHFSGF

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MVHGEESSWR MERAALPLNQ ALAYGVQAHH TAAAPPPSCF LDFQPAAAAA AYFGFGELEE  60
ALIHGGGGGA SASAGVDPGV IIKGDVATAQ TKTAAAGYIA GGGSGRPPTL EIFPSWPMRH  120
QQQLHSGNSQ SVGSTTDSSS AQNTMSQMEL VSPASPAPRQ EVMMVTTDDY SYKPGLASAP  180
AAAAPPPSFQ QQHHHPLPLH LHGGGDHDKR KQGSTRKDGK LADAKVGYLL LLLLPDSITV  240
PAFTERRLAQ NREAARKSRL RKKAYVQQLE TSRIRLQQVE HELQRARSQV CCSPNSETPS  300
DDRLIMHWMR VRIVQSLICH GIAVVQGLFV GGCSAGGDMS SGAAMFDMEY ARWLDDDSKQ  360
LAELRGGLQA HLLDGNLGLI VDECMQHYDE LFQLKAALAR ADVFHLLTGS WATPAERCFF  420
WMGGFRPSEL LKILIPQLDP LTEQQLLGIC NLQQSSEQAE EALAQGLHQL HQSLADTVAA  480
GTLNDGAAAP NYMSLMAVAL EKLASLESFY QQADNLRQQT LHQMRRILTT RQAARCFLSI  540
GEYYRRLRAL SNLWASRPRD DFIGTESLSP TATELQVMHQ QQQNHFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do009343.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF036949	0.0	AF036949.1 Zea mays basic leucine zipper protein (liguleless2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001104893.1	0.0	transcription factor LG2
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A1E5UZJ0	0.0	A0A1E5UZJ0_9POAL; Transcription factor HBP-1b(C1)
STRING	GRMZM2G060216_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-137	bZIP family protein

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]