PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do009338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 391aa MW: 41436.5 Da PI: 6.0207 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.4 | 3.5e-14 | 315 | 368 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +r+rr++kNRe+A rsR+RK+a++ eLe + L++eN +Lk e e +k++++ Do009338.1 315 RRQRRMIKNRESAARSRARKQAYTVELEAELNHLKEENARLKAE-ELVEKMMEQA 368 79****************************************55.5666776665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.2E-13 | 311 | 373 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.059 | 313 | 358 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.38E-10 | 315 | 358 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.2E-13 | 315 | 372 | No hit | No description |
Pfam | PF00170 | 1.3E-11 | 315 | 369 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 9.35E-25 | 315 | 356 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 318 | 333 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 391 aa Download sequence Send to blast |
MASEMSKNVK VLDEQEVTSH QRDRARASSA GAAAEEQAAD PLVRQASIMS LTLEELQNSL 60 CEPGRNFGSM NMDEFMANIW NAEEFQAATG GCEEDVEREA AAAATATGAG ENGGGGGGGS 120 GLVRQGSFAL PPPLSRKTVE EVWAEINQGP AAQAHSAPPQ AMVMQPQMGS GGGGVDRQVT 180 LGEMTLEDFL VRAGVVRGGF AGHGQAAGHM PQQGQQLAAP VMYQVAPANP AVYPVMGDGM 240 GYHNGYPGGM AVVPPPPPSQ CVARALSPGS SDGVSAMTQA EMMNCIGNGG MPRNGGNARK 300 RDSPEEGCTE KTVERRQRRM IKNRESAARS RARKQAYTVE LEAELNHLKE ENARLKAEEL 360 VEKMMEQARE NVSAKKKGGR RGLRRCGSAM W |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity in yeast (PubMed:17604002, PubMed:21055780, PubMed:18236009). Involved in abscisic acid (ABA) signaling pathway. Binds to the G-box motif 5'-CACGTG-3' of TRAB1 gene promoter (PubMed:17604002). Involved in the regulation of pollen maturation. May act as negative regulator of salt stress response (PubMed:18236009). Together with PYL5, PP2C30 and SAPK2, is part of an ABA signaling unit that modulates seed germination and early seedling growth (PubMed:22071266). {ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00294 | DAP | Transfer from AT2G36270 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do009338.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) (PubMed:21055780, PubMed:18236009, PubMed:22071266). Induced by salt stress. Down-regulated by cold and drought stresses (PubMed:18236009). {ECO:0000269|PubMed:18236009, ECO:0000269|PubMed:21055780, ECO:0000269|PubMed:22071266}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KF314701 | 0.0 | KF314701.1 Setaria italica clone SiABRE hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001296980.1 | 0.0 | protein ABSCISIC ACID-INSENSITIVE 5 | ||||
Swissprot | Q8RZ35 | 1e-155 | ABI5_ORYSJ; bZIP transcription factor ABI5 homolog | ||||
TrEMBL | A0A1E5UZL0 | 0.0 | A0A1E5UZL0_9POAL; Protein ABSCISIC ACID-INSENSITIVE 5 | ||||
STRING | Si001731m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3830 | 35 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56850.1 | 9e-38 | ABA-responsive element binding protein 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|