PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009330.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GeBP
Protein Properties Length: 334aa    MW: 35016.7 Da    PI: 6.9701
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009330.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573422.6e-1350138397
      DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                 +q+lws+ De++lL +   f+++tg  p   d  a+++ +++s+s ++ +   ++K+ rL  Kf +           s +  hd+ + +ls k+Wg
  Do009330.1  50 VQSLWSDADEVTLLAAAAAFRERTGRAPRRpDAGALFDSIRDSVSPHIDEAKACDKLCRLESKFLHGALG-------SSTGMHDHRVHDLSTKVWG 138
                 799***********************99988*********************************988777.......788999************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.1E-1251138IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
RRLREFAEAA KLVPAAAPAT RGSDASVAID GGHQRRGIAG VAVNLGNGAV QSLWSDADEV  60
TLLAAAAAFR ERTGRAPRRP DAGALFDSIR DSVSPHIDEA KACDKLCRLE SKFLHGALGS  120
STGMHDHRVH DLSTKVWGVG DVVSPSEDGP DGQDAEARHL ITERGPKPAP AVDALRPSDA  180
APMDADATTA PASPPISKKR SPSPQPGMGD AHQDPNSSPR GSPSRRSELN RRLRTSVEST  240
VVALTAAAAA RRSNVDGGHE EVQNLEAAGV AVDLGHGAAQ RLEPNDDRGH GAAPNYPKTW  300
SNADEVSLLD AAAAFRERTG LPPSAAFRRV FMHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454616.15e-50uncharacterized protein LOC8075205
TrEMBLA0A1E5WMC40.0A0A1E5WMC4_9POAL; Uncharacterized protein (Fragment)
STRINGSi017003m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-08DNA-binding storekeeper protein-related transcriptional regulator