PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009310.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 271aa    MW: 29332.9 Da    PI: 4.3907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009310.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.93.3e-104288555
         AP2  5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                GVr  + +g ++AeIr+ps+   r r+++g+f  a +Aa a++aa+ +++g
  Do009310.1 42 GVR-ERLWGGYAAEIRVPSS---RYRVWIGRFQHALQAALAYDAAMFCFYG 88
                998.777**********965...4**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-1539106IPR001471AP2/ERF domain
PROSITE profilePS5103216.35739100IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-114091IPR016177DNA-binding domain
CDDcd000181.25E-1741102No hitNo description
Gene3DG3DSA:3.30.730.101.6E-1841101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MASSAPIGSN VPARKARRTR RPAFFPRPPA PGGIHKELGW VGVRERLWGG YAAEIRVPSS  60
RYRVWIGRFQ HALQAALAYD AAMFCFYGDN LPKLRKYNFP ELPRPEIPDY GRYAGLTVDN  120
IKEIADKHAR DFAPFVPLPP VIPAPAAPVQ VAEAGGGAAA AGEGVAAAAG TGATDTVDGH  180
GNDDEVYIDA DILTGDDLQF PSNDPDDFIR LMDVDVDVIF RATSTTDCHG NDVVYIDAEI  240
LTSEDLQFSS NNPDGFIGLI DVDMDLIFSE I
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974850.18e-66ethylene-responsive transcription factor ABI4-like
TrEMBLA0A1E5VYC80.0A0A1E5VYC8_9POAL; Uncharacterized protein
STRINGPavir.Fa00470.1.p3e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.18e-12ERF family protein