PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009279.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 288aa    MW: 30928.7 Da    PI: 6.3044
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009279.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.1e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l d++ ++G g+W+t + + g+ R +k+c++rw +yl
       Do009279.1 15 KGLWSPEEDEKLRDYILRHGHGCWSTLPVKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding52.88.9e-1769113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g ++ eE+e    ++++lG++ W+ Iar+++ gRt++++k++w++yl
       Do009279.1  69 GMFSREEEETVMSLHAKLGNK-WSQIARHLP-GRTDNEVKNYWNSYL 113
                      56999****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-211065IPR009057Homeodomain-like
PROSITE profilePS5129413.1621062IPR017930Myb domain
SuperFamilySSF466892.6E-2813109IPR009057Homeodomain-like
SMARTSM007172.1E-101464IPR001005SANT/Myb domain
PfamPF002497.6E-131562IPR001005SANT/Myb domain
CDDcd001676.79E-101862No hitNo description
PROSITE profilePS5129425.44863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2566116IPR009057Homeodomain-like
SMARTSM007174.8E-1467115IPR001005SANT/Myb domain
PfamPF002493.4E-1569113IPR001005SANT/Myb domain
CDDcd001672.57E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGCKACQKPK VQYRKGLWSP EEDEKLRDYI LRHGHGCWST LPVKAGLQRN GKSCRLRWIN  60
YLRPGLKHGM FSREEEETVM SLHAKLGNKW SQIARHLPGR TDNEVKNYWN SYLKKRVEGG  120
AQAKCAADPA TPAGSDARAG SPNPSDSGGQ ERLNRPASSD SSEPVESSSA DDSSCLTVTE  180
PAGAGAAVRP HAPVLPKVMF ADWLDMDYGT SLVALGPDAG VFDVMSGRSL SHQGSSVQVD  240
GPCGVVDSLH GLGDGGMCWG FDTAADQMDV EGGGFCDLLS MSEFLGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-24151187109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009279.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0915921e-158FP091592.1 Phyllostachys edulis cDNA clone: bphylf055c23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823961.10.0transcription factor LAF1-like
SwissprotQ9M0K45e-60LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A1E5W1230.0A0A1E5W123_9POAL; Transcription factor LAF1
STRINGSi012304m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.17e-59myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]