PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do009234.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 230aa MW: 23405.4 Da PI: 10.3842 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.8 | 9.4e-35 | 60 | 169 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg................ 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++sss ++++++ Do009234.1 60 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSHYHHQQQQtvlgkrprdeggdaaa 158 89*******************************************************999994442211222222222222223444445555555555 PP TCP 89 ..........k 89 + Do009234.1 159 aaigtaaaasA 169 55555444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.3E-31 | 59 | 143 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 59 | 113 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAATRDVSAA AALFHVYQPL PVPSTAAPAA VLAAAAADGA GAMVVPAKAV KKEGGGGGGK 60 DRHSKVNGRG RRVRMPIVCA ARVFQLTREL GLKSDGQTIE WLLRQAEPSI LAATGSGTTP 120 AVFVSSSAPS TSSSHYHHQQ QQTVLGKRPR DEGGDAAAAA IGTAAAASAF WAALPAAPRT 180 TAEAWGFSPL EAQAAAAAAA YVPMAQAHHH HLNLLAALSG AARRAEEETR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00655 | PBM | Transfer from LOC_Os02g42380 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do009234.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727699 | 1e-116 | KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953208.1 | 1e-102 | transcription factor TCP21-like | ||||
Swissprot | Q9FMX2 | 4e-40 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A1E5VZR8 | 1e-160 | A0A1E5VZR8_9POAL; Transcription factor TCP7 | ||||
STRING | Sb04g026970.1 | 4e-88 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 5e-33 | TCP family protein |