PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do009232.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 98aa MW: 10592.8 Da PI: 11.561 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 71.1 | 2.1e-22 | 2 | 97 | 276 | 373 |
GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +r+s +r+ E++ l++++ n+va eg +r r+e ++kWr+r+++aG++pv+++e +a+ +++ l + g+ v+ +sg l gW++r ++++SaW Do009232.1 2 ARDSAQRAXAEEA-LANKAANAVAREGPDRLDRCEVFGKWRSRFGMAGLRPVAIGEAVADRVRARLGHAR-SGFDVKLDSGRLGVGWMGRVVTVASAW 97 6899999999999.99**************************************************9998.99************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 11.782 | 1 | 79 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.3E-20 | 2 | 97 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MARDSAQRAX AEEALANKAA NAVAREGPDR LDRCEVFGKW RSRFGMAGLR PVAIGEAVAD 60 RVRARLGHAR SGFDVKLDSG RLGVGWMGRV VTVASAWH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do009232.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957074 | 9e-84 | EU957074.1 Zea mays clone 1581966 chitin-inducible gibberellin-responsive protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953458.1 | 2e-52 | scarecrow-like protein 8 | ||||
TrEMBL | A0A1E5UIJ8 | 6e-61 | A0A1E5UIJ8_9POAL; Uncharacterized protein | ||||
STRING | Si016627m | 8e-52 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 4e-22 | SCARECROW-like 8 |