PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009224.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 354aa    MW: 38351.9 Da    PI: 6.7411
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009224.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-172673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
       Do009224.1 26 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 73
                     89********************************************97 PP
2Myb_DNA-binding53.65.1e-1779122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       Do009224.1  79 RGNLTPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 122
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8852173IPR017930Myb domain
SuperFamilySSF466896.74E-3123120IPR009057Homeodomain-like
SMARTSM007171.2E-132575IPR001005SANT/Myb domain
PfamPF002496.1E-152673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-232780IPR009057Homeodomain-like
CDDcd001672.53E-112873No hitNo description
PROSITE profilePS5129426.28174128IPR017930Myb domain
SMARTSM007171.5E-1578126IPR001005SANT/Myb domain
PfamPF002496.9E-1679122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2481127IPR009057Homeodomain-like
CDDcd001677.00E-1383122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSQRKGAAMA AVTSSKHEEE MMELRRGPWT LEEDNLLMNY IACHGEGRWN LLARCSGLKR  60
TGKSCRLRWL NYLKPDIKRG NLTPEEQLLI LELHSKWGNR WSRIAQHLPG RTDNEIKNYW  120
RTRVQKQARQ LRVDANSAVF RDAVRCYWMP RLLEKMAATS AHQVDPAALL HPAHLAGMAS  180
ASSPVHGGQH DANNALGSGG SSYGHHHQRY PVGPSPSTST SGSVSSSTSA ALLPVPCFSE  240
LSWVDQYGPY ADLDVGAGGA FDSAALGDLG LDGLDLGPAD CDVYSDSTLL DYLNSTCTGD  300
TMMAMMNSGG NAHISSCGAM EGADGDYGSS SWRTDELCQA AARKLGDHQW GGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-26231271104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009224.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794270.0HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814736.10.0transcription factor MYB2-like
TrEMBLA0A1E5VU100.0A0A1E5VU10_9POAL; Transcription factor MYB108
STRINGPavir.Ea00660.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-81myb domain protein 62