PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do009109.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family BES1
Protein Properties Length: 511aa    MW: 57415 Da    PI: 7.0441
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do009109.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822157.78.1e-49481814133
      DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl...eeaeaagssasaspesslq.ssl 98 
                 g++++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + + +     + + g ++ as+e++   ++l
  Do009109.1  48 GEREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRSSNQTPlppPPPPQLGMFQVASVETPALfNTL 146
                 67899**************************************************************88886667788999************999*** PP

      DUF822  99 kssalaspvesysaspksssfpspssldsislasa 133
                 +s+a+ +p++s+++ +++++++spsslds+ +  +
  Do009109.1 147 NSYAIGTPLDSQASALQTDDSLSPSSLDSVVAGRS 181
                 ****************************9987654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.4E-4748198IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.804.6E-25217296IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514455.85E-100218511IPR017853Glycoside hydrolase superfamily
PRINTSPR007503.8E-7255269IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.8E-7276294IPR001554Glycoside hydrolase, family 14
PfamPF013732.4E-35295448IPR001554Glycoside hydrolase, family 14
Gene3DG3DSA:3.20.20.803.5E-63297436IPR013781Glycoside hydrolase, catalytic domain
Gene3DG3DSA:3.20.20.801.9E-7437511IPR013781Glycoside hydrolase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MSMKHQHPHP LLGEEEPAPS PPPQRRPRGF ASGPAPSAGA AGPQRRRGER EREREKERTK  60
LRERHRRAIT SRMLAGLRQH GNFPLPARAD MNDVLAALAR AAGWTVHPDG TTFRSSNQTP  120
LPPPPPPQLG MFQVASVETP ALFNTLNSYA IGTPLDSQAS ALQTDDSLSP SSLDSVVAGR  180
SIKIENYGNS SSVDSLNCMD NDQLLRSSAV LAGDYTKTPY IPVYASLPMG IINSHCQLVD  240
PEGVRAELRH LKSLNVDGVI VDCWWGIVEA WIPCKYEWSG YRDLFGIIKE FKLKVQVYFD  300
FMRSFHMEFR NLSEEGLIST IEIGLGASGE LRYPSFPERM GWKYPGIGEF QCYDRYMQRN  360
LRQSTLSRGH LFWARGPDNA GYYNSRPHET GFFCDGGDYD SYYGRFFLNW YSGVLIDHVD  420
QVLSLATLAF DGAEIVVKVM NAAWVHGLPL CIESAIPCLD GDMYSQILDT AKARNDPDRH  480
HASFFAYRQQ PPFLLQRDAC FPELRTFVKC M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A2e-3922044411301BETA-AMYLASE
1q6c_A2e-3922044411301beta-amylase
1q6d_A2e-3922044411301beta-amylase
1q6g_A2e-3922044411301beta-amylase
1v3i_A2e-3922044411301Beta-amylase
1wdp_A2e-3922044411301Beta-amylase
1wdq_A2e-3922044411301Beta-amylase
1wdr_A2e-3922044411301Beta-amylase
1wds_A2e-3922044411301Beta-amylase
2dqx_A2e-3922044411301Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo009109.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622759.10.0beta-amylase 8
SwissprotQ9FH802e-80BAM8_ARATH; Beta-amylase 8
TrEMBLA0A1E5V6W00.0A0A1E5V6W0_9POAL; Beta-amylase (Fragment)
STRINGPavir.Aa03184.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.15e-68beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]