PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do009076.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 526aa MW: 56113.8 Da PI: 8.0492

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do009076.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	145	205	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+ss Do009076.1 145 PDKILPCPRCNSMDTKFCYYNNYNIKQPRHFCKSCQRYWTAGGSMRNIPVGAGRRKSKSSS 205 7899*****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	142	202	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-32	147	203	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	149	203	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	151	187	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MELAGAASPR SPESHVAPPR PPPHPPEKEK VTAFIFQAYL QFSNTCNCSA IDELVRSRIS 60 VLLPLFFSKK FANSPDTGDM KTTGEKPCTH QELDIGQTNS SSLNSSSECE NQPPSNDEMT 120 GSESNLETAK TKGDVPIGEK VLKKPDKILP CPRCNSMDTK FCYYNNYNIK QPRHFCKSCQ 180 RYWTAGGSMR NIPVGAGRRK SKSSSANCRS ILIPGSSVAT AVGEASLFPL SINGNQAAVN 240 FGTDSPLCNS MASVLKIGGE QSKNANPAST AQPRNGETQT CSPSTTTSDA PRSESHKGTV 300 SAHQNGVVGH GNGVTSMHPI PFFPGPPFVY PWSPAWNGIP AMAAPVSPAP AEAANYSENG 360 NSSSNVQWNV PPMVPVLPPG FCGPPIPVPV MPPSVWPFIT PWPNGAWSTP WLGAGSSVSA 420 SSPTSSSTCS DSGSPVLGKH SRDSRPQGDE KAERCLWIPK TLRIDDPDEA AKSSIWTTLG 480 IEPGERGMFR PFQSKPESRE QISSSAKVLQ ANPAALSRSQ SFQETT

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MELAGAASPR SPESHVAPPR PPPHPPEKEK VTAFIFQAYL QFSNTCNCSA IDELVRSRIS  60
VLLPLFFSKK FANSPDTGDM KTTGEKPCTH QELDIGQTNS SSLNSSSECE NQPPSNDEMT  120
GSESNLETAK TKGDVPIGEK VLKKPDKILP CPRCNSMDTK FCYYNNYNIK QPRHFCKSCQ  180
RYWTAGGSMR NIPVGAGRRK SKSSSANCRS ILIPGSSVAT AVGEASLFPL SINGNQAAVN  240
FGTDSPLCNS MASVLKIGGE QSKNANPAST AQPRNGETQT CSPSTTTSDA PRSESHKGTV  300
SAHQNGVVGH GNGVTSMHPI PFFPGPPFVY PWSPAWNGIP AMAAPVSPAP AEAANYSENG  360
NSSSNVQWNV PPMVPVLPPG FCGPPIPVPV MPPSVWPFIT PWPNGAWSTP WLGAGSSVSA  420
SSPTSSSTCS DSGSPVLGKH SRDSRPQGDE KAERCLWIPK TLRIDDPDEA AKSSIWTTLG  480
IEPGERGMFR PFQSKPESRE QISSSAKVLQ ANPAALSRSQ SFQETT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do009076.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800855.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A1E5WGR3	0.0	A0A1E5WGR3_9POAL; Cyclic dof factor 2
STRING	Si029673m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-45	cycling DOF factor 2