PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do008996.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 1216aa MW: 127815 Da PI: 8.2464

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do008996.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H+r H Do008996.1 6 FVCEVCHKGFQRYQNLQLHLRGH 28 89*******************98 PP
2	zf-C2H2	16.1	3.3e-05	778	800	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Do008996.1 778 FVCEVCNKGFQREQNLQLHRRGH 800 89*******************88 PP
3	zf-C2H2	11.9	0.00067	854	876	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Do008996.1 854 WKCDKCNKRYAVQSDWKAHSKTC 876 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.13E-5	5	28	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-4	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.429	6	28	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.0033	6	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0081	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.13E-5	77	102	No hit	No description
SMART	SM00355	200	82	102	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.77E-7	777	800	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.9E-5	777	800	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.094	778	800	IPR007087	Zinc finger, C2H2
Pfam	PF12874	8.7E-4	778	800	No hit	No description
SMART	SM00355	0.0041	778	800	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	780	800	IPR007087	Zinc finger, C2H2
SMART	SM00355	300	819	849	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.5E-5	842	875	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.77E-7	849	874	No hit	No description
SMART	SM00355	110	854	874	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1216 aa Download sequence Send to blast
MATNRFVCEV CHKGFQRYQN LQLHLRGHGL PWMLKQKNPE DSRRRVYLCP EPTCVHHHPS 60 RALGDLTGIK KHYCRKHGKK TLKCDKCNKL YAVESDWKAH TKICGTREYR CDCGSVFSRK 120 DSFINHSTYC SGAPHESAQL SPMGADLHVG SGSVSLGLSG GDAQIHGFAD EAQSSSAAAA 180 AQFDFFDHIM PSSPGPSMFR SQASASSSSF FLGGGTPSPA QDFSEDGEYS QGQGSSLLHG 240 KQPFHGLIQL PEQQHQPGSI NANGNLLNLG FFPGNSSGSA GGPHSPARDF SEDGETFQGG 300 QGSSLLHGKQ PFHGLMQHPE HQYQPGSSNV HSNLLNLGFF PGNSGGSAGD AYSPARDFSG 360 DGENFQGGHG SYLLHGKHPF HGLMHQLPKQ QHQPGSSNAH GNLLNLGFYS GNNGGSAGGQ 420 DARLVIQDQY YNGSSGGSNA NCNLLTLGFF SGNSGGSANG QNVRPVIQDQ FDGIGGSSNA 480 EHGGVMAPIG SHHSGGFPYQ YNSSPSAGSA LNSATALLMK AAQMGSMSSA HNSPSALLRA 540 AGFNTASSDQ GTSRDEGERA SHAAHFHDLI MSSLPRGGGG FFDGGAAGFG ATDDGTLSTR 600 DFLGALGPGQ DEGRYDDPSE DAGSEADRYT QRLPCRLSVT WTARSPESRA SHPTREVAAS 660 CTSEPKGRGK LAKEGKRSRP GRVVFFLPMA AASSAPFFGL GNTQMQPQAQ SSSLQQNSAA 720 APATAAPPKK KRNQPGNPSK SPNPSALMIC MIDDEHVLYP DAEVIALSPR TLLATNRFVC 780 EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PKEARRRVYL CPEPTCVHHD PSRALGDLTG 840 IKKHYCRKHG EKKWKCDKCN KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA 900 FCDALARESA QMPPIGAGLY VGSGSMSLGL SGAAAQMHGF ADQAQSSSAA AAAQFDHIMP 960 LSASGPSMFR SQVSASSSPF FLGGGAPSPA QDVSEDGEHS QGGQGSSLLH GKQPFHGLIQ 1020 LPEHQHQPGS SNSNGNLLNL GFFSGNNGGS AGGQDARLVI QDQFSGGGNA ADHGGVMASI 1080 GGHLSGGFPS SLYSSSPSAS LAQNSATALL MKAAQMGSTS SAHNGPSALL RAAGFSAASG 1140 QGTSRATGER TSHEQHFHDL IMNSLAGGGG GFSVATAGLG AVDDGKLSTR DFLGVGRGAM 1200 APPGLHIGAL DPAQMK

Sequence ? help Back to Top

Protein Sequence Length: 1216 aa Download sequence Send to blast

MATNRFVCEV CHKGFQRYQN LQLHLRGHGL PWMLKQKNPE DSRRRVYLCP EPTCVHHHPS  60
RALGDLTGIK KHYCRKHGKK TLKCDKCNKL YAVESDWKAH TKICGTREYR CDCGSVFSRK  120
DSFINHSTYC SGAPHESAQL SPMGADLHVG SGSVSLGLSG GDAQIHGFAD EAQSSSAAAA  180
AQFDFFDHIM PSSPGPSMFR SQASASSSSF FLGGGTPSPA QDFSEDGEYS QGQGSSLLHG  240
KQPFHGLIQL PEQQHQPGSI NANGNLLNLG FFPGNSSGSA GGPHSPARDF SEDGETFQGG  300
QGSSLLHGKQ PFHGLMQHPE HQYQPGSSNV HSNLLNLGFF PGNSGGSAGD AYSPARDFSG  360
DGENFQGGHG SYLLHGKHPF HGLMHQLPKQ QHQPGSSNAH GNLLNLGFYS GNNGGSAGGQ  420
DARLVIQDQY YNGSSGGSNA NCNLLTLGFF SGNSGGSANG QNVRPVIQDQ FDGIGGSSNA  480
EHGGVMAPIG SHHSGGFPYQ YNSSPSAGSA LNSATALLMK AAQMGSMSSA HNSPSALLRA  540
AGFNTASSDQ GTSRDEGERA SHAAHFHDLI MSSLPRGGGG FFDGGAAGFG ATDDGTLSTR  600
DFLGALGPGQ DEGRYDDPSE DAGSEADRYT QRLPCRLSVT WTARSPESRA SHPTREVAAS  660
CTSEPKGRGK LAKEGKRSRP GRVVFFLPMA AASSAPFFGL GNTQMQPQAQ SSSLQQNSAA  720
APATAAPPKK KRNQPGNPSK SPNPSALMIC MIDDEHVLYP DAEVIALSPR TLLATNRFVC  780
EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PKEARRRVYL CPEPTCVHHD PSRALGDLTG  840
IKKHYCRKHG EKKWKCDKCN KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA  900
FCDALARESA QMPPIGAGLY VGSGSMSLGL SGAAAQMHGF ADQAQSSSAA AAAQFDHIMP  960
LSASGPSMFR SQVSASSSPF FLGGGAPSPA QDVSEDGEHS QGGQGSSLLH GKQPFHGLIQ  1020
LPEHQHQPGS SNSNGNLLNL GFFSGNNGGS AGGQDARLVI QDQFSGGGNA ADHGGVMASI  1080
GGHLSGGFPS SLYSSSPSAS LAQNSATALL MKAAQMGSTS SAHNGPSALL RAAGFSAASG  1140
QGTSRATGER TSHEQHFHDL IMNSLAGGGG GFSVATAGLG AVDDGKLSTR DFLGVGRGAM  1200
APPGLHIGAL DPAQMK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-33	78	912	3	68	Zinc finger protein JACKDAW
5b3h_F	4e-33	78	912	3	68	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00256	DAP	Transfer from AT2G02080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do008996.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957598.1	0.0	protein indeterminate-domain 5, chloroplastic
Refseq	XP_004957599.1	0.0	protein indeterminate-domain 5, chloroplastic
Refseq	XP_004957600.1	0.0	protein indeterminate-domain 5, chloroplastic
Swissprot	Q8GYC1	1e-110	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	K3ZSG0	0.0	K3ZSG0_SETIT; Uncharacterized protein
STRING	Si029540m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	5e-98	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]