PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do008907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GATA | ||||||||
Protein Properties | Length: 198aa MW: 21843 Da PI: 5.8759 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 43 | 6.3e-14 | 28 | 64 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cg + Tp++Rrgp+g +tLCnaCG+ ++k ++ Do008907.1 28 CLRCGISAnaTPHMRRGPEGRRTLCNACGIAWAKGKM 64 5567766667***********************9875 PP | |||||||
2 | FAR1 | 40.9 | 6.6e-13 | 98 | 143 | 1 | 47 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fYn+YA ++GFsvrks+s ks +n + +rtfvCs+eg+r +++ Do008907.1 98 EFYNRYAGHLGFSVRKSSSDKSAENI-TRSRTFVCSREGFRPFIDHQ 143 6*********************6665.99***********9866665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.4E-6 | 22 | 74 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-10 | 22 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-11 | 27 | 65 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.9E-11 | 29 | 62 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.54E-7 | 38 | 65 | No hit | No description |
Pfam | PF03101 | 4.6E-10 | 98 | 149 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MQFDDDRDIG AAGGNGEVDD KVDEPARCLR CGISANATPH MRRGPEGRRT LCNACGIAWA 60 KGKMRKVIDS DAHIDDATVA KMVPEVGMEF DDEDKAYEFY NRYAGHLGFS VRKSSSDKSA 120 ENITRSRTFV CSREGFRPFI DHQQMQINNQ PNHDSSLSNF HQQGPHGDAQ GNQGYTPLAG 180 IQPQQFIGNF ELNSGAGF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do008907.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021301556.1 | 7e-87 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_021301561.1 | 7e-87 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_021301564.1 | 7e-87 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_021301566.1 | 7e-87 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A1E5V3C0 | 1e-147 | A0A1E5V3C0_9POAL; Uncharacterized protein | ||||
STRING | Traes_4DL_C77385A0D.2 | 1e-70 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15039 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.3 | 8e-13 | GATA-type zinc finger protein with TIFY domain |