PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008895.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 342aa    MW: 35955 Da    PI: 5.181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008895.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.28.2e-15179226355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A+ Y+++Lq
  Do008895.1 179 QDHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATSYVRELQ 226
                 5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.132176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-12180226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-18180234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-17180237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.32E-16181230No hitNo description
SMARTSM003536.1E-16182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEDSSQFMQW ALSTLQHEQP PPATPAPATD YDNGCDSVSS IPVLGYPASV DSLVPGEPPA  60
REGQPATNSW SSVDTDSGSG GGGSASVTTW SPSQHSAMCA TTAPSSCSSG TNQQVSWDFN  120
SASAQLIREA QQPNSAADAA ARAERDGGGA LQMVQHGSPP TRRASARISA SSSSAPYSQD  180
HIIAERKRRE KINQRFIELS TVIPGLKKMD KATILSDATS YVRELQEKLK AQQDGSSRGR  240
GMESAVLVKK PLIAAPDDDD EGGAAPSPAA TRSALPEIEA MISDGNVMVR IHCQDSKGVL  300
VRLLAEIEGL HLGITHTNVV QFSASILIIN IMAKASSLTF LS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189ERKRRE
2185190RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008895.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3646678e-44AK364667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792499.11e-147transcription factor bHLH18-like
TrEMBLA0A1E5WCW80.0A0A1E5WCW8_9POAL; Transcription factor bHLH25
STRINGPavir.Ia01059.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-37bHLH family protein