PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do008850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 461aa MW: 48333.6 Da PI: 9.9266 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129 | 4.6e-40 | 63 | 213 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesssssa 82 g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a ai++l+++ +++++ +++ +s ++ + Do008850.1 63 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAADAIDKLPSLdasagfpshpasaagkeqQQTPPPDADGGSLQQDN 161 689*************************************************************88887766655555544422222333555555555 PP TCP 83 snsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 ++++++++ + + +s+ s++s+ s+l+l++ esr kar+rarer++ r k Do008850.1 162 NHHHHQQQLTRSGCSSTSETSKGSVLSLSRsESRVKARERARERSAAACRDK 213 5666668888888*******************************98776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-42 | 64 | 209 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.856 | 65 | 123 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.487 | 192 | 213 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MEAALGVGGG EGRNKRGRVK GAGAEPEAKR RALAAPAAAA LAVPSPWAQQ HPASRIYRVS 60 RASGGKDRHS KVYTAKGIRD RRVRLSVATA IQFYDLQDRL GYDQPSKAIE WLIKAAADAI 120 DKLPSLDASA GFPSHPASAA GKEQQQTPPP DADGGSLQQD NNHHHHQQQL TRSGCSSTSE 180 TSKGSVLSLS RSESRVKARE RARERSAAAC RDKDKDPADD AATGRRAAAA TTTSAQAASF 240 TELLTGMAAA SAAAASAAPA EHKQQPSSAP WQPMPVSATA DYIGFAQPRK AAGHPMAHSF 300 VSPAPHLGNI ASIAMAPAQH FGLASGAVTV ASGGGDGEPH GEMTQFSFLQ DHYMPVHAAP 360 ASGPAGDYNL NFSMSSGLVG VNSRGTLQSN SQPQISGHHH HHHQQQQLQR LSTPLDAPNI 420 PFLFSPAVAV ATPTTAESQF AAAFQLWNGF QHADMKEKGK N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-27 | 70 | 124 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-27 | 70 | 124 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do008850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020396804.1 | 0.0 | transcription factor PCF6 | ||||
TrEMBL | A0A1E5W0K9 | 0.0 | A0A1E5W0K9_9POAL; Transcription factor PCF6 | ||||
STRING | Pavir.Ba03864.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-38 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |