PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008623.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 445aa    MW: 46542.9 Da    PI: 7.3081
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008623.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.84.7e-41116192278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 C v+gC+adls++++yhrrhkvCe+hsk+p+v+v+g+e rfCqqCsrfh l efD++krsCr+rL++hn+rrrk+q+
  Do008623.1 116 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPTVVVAGREMRFCQQCSRFHLLAEFDDAKRSCRKRLDGHNRRRRKPQP 192
                 **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-35109177IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.103113190IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-38114195IPR004333Transcription factor, SBP-box
PfamPF031104.2E-31116189IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDWDLKMPVS WDLAELDHDA VPAIAAGPSA AAASGIAAAA AAAAAAARGT PSRAECSVDL  60
KLGGLGEFGA ADRMKEPAAP VSAAAAGAAV VPSASPMKRP RSGASGAAGG AQCPSCAVDG  120
CKADLSKCRD YHRRHKVCEA HSKTPTVVVA GREMRFCQQC SRFHLLAEFD DAKRSCRKRL  180
DGHNRRRRKP QPDTMNSGSF MTSQQGLFSS AGTRFSSFPA PTPEPSWSGL IKSEDSSYYT  240
HHQVLSSRPH FAGSTPAYSK EGRRFPFLQD GDQVSFSAGA ATLEVSTVCQ PLLKTVAPPP  300
ESSSSNKIFS DGLTPVLDSD CALSLLSSPA NSSSVDVSRM VQPTEHIPMA HPLVPSLHHH  360
HHQQHHQFGS SPGWFACSQA GSSGVTAAGA GGFACPTTGV ESEQLNTVLV PSSDAGHEMN  420
YHGIFHVGGE GSSDGTSPSL PFSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-28106189184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172189KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008623.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538750.0BT053875.1 Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803088.10.0squamosa promoter-binding-like protein 18 isoform X1
SwissprotQ0J0K11e-160SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A1E5UIE10.0A0A1E5UIE1_9POAL; Squamosa promoter-binding-like protein 18
STRINGGRMZM2G061734_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-43SBP family protein