PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008573.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 534aa    MW: 61023.7 Da    PI: 4.6504
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008573.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.51.3e-2496182290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+
  Do008573.1  96 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELV 182
                 7*****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2296182IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEGTSIAIEI DGEAICLDNV GDNEQEAQED GDMQQIIYSA ENGEQVAFHT QEQGREEDPA  60
GNEEDREHNS IIPSREELTE ELRNKVAYSE EEAYRLYCDY GHRMGFSVRK GKQYYFTGTK  120
TIRTKDYYCS KEGLKDDEQL TEANFNKPET RTNCKAMVRF RVDSEGQWRV IQIIPEHNHE  180
LVRPEEIHLL RSVRTLSVPK PGVLNAMVNA EIQAMHDSLH INEDGTECHS QLSIRSYTLL  240
EPEDSFHSIL SKCMRECESE AEFDEAWAMM HQEYNMQEHQ WLSDLYQQRH KWCTALHKDA  300
FDGGIESLDR SEGSNNVLSS ISDESTSLIT FVLELDKTVG SWRKNESLED IQCKRAAPEC  360
AVKHSSILQH AAEEYTHKVY KALETDFLEG CGATSYQEVQ CDETLYRAMW FVYDLLMKSK  420
SHHNTRKLIL DVLESGEKSL ESVCELKKLH MHPLGKEKDG RNVKQVVLPQ PADSVFVDPP  480
NQDQYYAAED IASNSSIGRP FFYQGYPATG VSTSQIQGHT NMQSVPQCAS QVLQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008573.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0690660.0BT069066.1 Zea mays full-length cDNA clone ZM_BFb0161A09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977332.11e-162protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1E5WH110.0A0A1E5WH11_9POAL; Uncharacterized protein
STRINGSi009370m1e-162(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-15FAR1-related sequence 5