PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008572.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 891aa    MW: 97214.7 Da    PI: 6.8118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008572.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000696977341355
                 HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  Do008572.1 697 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 734
                 67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-306154IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.804684733IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4697742IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGFC GHATCSAGSE APDAGCKQGS  60
SVCTLVREVM ASQIHVVGEG TIGRAAFTGN HQWIVHDPAN DHSLRSEVSA EMNHQFLAGI  120
QTIAIIPVLP RGVLQLGSTN VVMEDTNLVL QYKKLCSQLN NRSSMASSSS VKNDLNQKIQ  180
SRPLNAPPSI YPADVRSKIF SGPPVTYQQC YGPDATTVSS STLANEGSNA SMLMVAQRNG  240
QVVKEHILYA PDMRFRPQNP YCDSRVESNT QSSVVSSGFI SSISTAMEKH PLLMTNSRQL  300
EQGNMGEASD PRNILLKSLA CRNPLVHENT NVTLLHGRGQ VPDFVNGHGG FNFLPEGTRV  360
VKGNLYASTT NQNLDQRYNS ASGMTGHKAA VSYKMPQPAQ YVMKRESPKG ETFQASAAVS  420
SGSNIQASSS LQTAISKEKQ MSSSDLVGPQ KANEVHDPAD VIVQAVKNMD RRKLPDISSE  480
RASSLLMDPT AESDLFDMFG SEFHHLYRNV DTDLTWKAAK PESSNRDAPE SSVHVDTSPA  540
FDPVDDEFPY SGIFSVTDTD QLLDAVISNV NPGGKQISGD SASCKTSVTD IPISSYCRSK  600
EPKHCESSGA PPLLNKNELA VSNLVKQPSF LEKGEDGRLS QNNGMHKSQI RLWIESGQNM  660
KCESVSASNS KGVDTSSKAS RKRSRPGENP KPRPKDRQLI QDRIKELREL VPNGAKCSID  720
ALLEKTIKHM LFLQSVTKHA DNLKDSNESK ILGGENGPLK DYFEGGATWA FDVGSQSMTC  780
PIIVEDLDRP RQMLVEMLCE DRGIFLEIAD FIKGLGLTIL RGVMEARKSK IWARFTVEAN  840
RDVTRMEIFL SLMRLLEPSC DGGGSGENPN NIKMPLGVLQ YPVIPVTGHL R
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008572.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808394.10.0transcription factor LHW-like
TrEMBLA0A1E5WGB50.0A0A1E5WGB5_9POAL; Transcription factor LHW
STRINGPavir.Ca00201.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-51conserved peptide upstream open reading frame 7