PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008465.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 512aa    MW: 53446.8 Da    PI: 11.3277
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008465.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.7e-21146194355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+W+AeIr p+    + +r++lg+fgt+e+Aa+a++aa ++l+g
  Do008465.1 146 YRGVRRRP-WGKWAAEIRNPK----KaARVWLGTFGTPEDAARAYDAAELRLRG 194
                 9*******.**********84....45*************************98 PP
2AP264.91.6e-20440488355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+W+AeIrdp+    + +r++lg+f t+e+Aa+a++aa+++l+g
  Do008465.1 440 YRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFVTPEDAARAYDAAALRLRG 488
                 9*******.**********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.816145202IPR001471AP2/ERF domain
SMARTSM003801.6E-34145208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-31145203IPR001471AP2/ERF domain
PfamPF008475.2E-15145194IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-21146203IPR016177DNA-binding domain
CDDcd000185.50E-24153204No hitNo description
SMARTSM003807.2E-37439502IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-32439497IPR001471AP2/ERF domain
PROSITE profilePS5103225.238439496IPR001471AP2/ERF domain
PfamPF008473.3E-14439488IPR001471AP2/ERF domain
PRINTSPR003671.2E-13440451IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-22440497IPR016177DNA-binding domain
CDDcd000189.36E-15447498No hitNo description
PRINTSPR003671.2E-13478498IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MMRPPPSSSV PTAAALREAT EAAAIVAALA QVIAGGRGAT VTPLPTPPAP SLVVPPSCTW  60
TAVVGPAAYQ GETSASAHMV SGTSARSPAP VASPWLLCSA SGAQDRTAPA QSLVPSAAQA  120
LMASAWPQGT EQGRPPTPSP PARRSYRGVR RRPWGKWAAE IRNPKKAARV WLGTFGTPED  180
AARAYDAAEL RLRGSRAKLN FPEDASSLRH LPAPVGARQP SSGWDPTMVR SRCPEMTRRR  240
DATDGFIGGD NGRFLGSWSI GTSPPSLKAT CSTAPVDATQ LCGRHGAGSS GTEDAGNHPP  300
TPPHPLPSQI HRLCLLLRYV ASSFELPLLQ DGLLDRQSCH VHGGPRGHCY SLKAVAAAVT  360
RAVVAILHVL AGAMSCAAAT SSSPATEARK ALVASASATV DPKKGLMASA TQERAPMAST  420
RSPVAQRGAA AAAAPARRSY RGVRRRPWGK WAAEIRDPRK AARVWLGTFV TPEDAARAYD  480
AAALRLRGSR AKLNFPEDAS SLRHPPPPAS SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-22144501468ATERF1
3gcc_A7e-22144501468ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056119e-57AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149589e-57AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821609.15e-91ethylene-responsive transcription factor ERF095-like
TrEMBLA0A2S3GQ771e-103A0A2S3GQ77_9POAL; Uncharacterized protein
STRINGSi019157m2e-84(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-24ERF family protein