PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008453.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 543aa    MW: 56930.5 Da    PI: 7.504
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008453.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS184.66.7e-571485302374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetsekn.....sseelaalkl..fsevsPilk 92 
                 ++lL  cA a++sg+l +aq+lL  l elas +g+ ++Rlaa+ ++ALa rl   v + + +++++ + +  +     ++ +l+  +l  f+evsP++ 
  Do008453.1 148 EQLLNPCAVAIESGNLPRAQHLLYVLGELASFSGEQNHRLAAHGLRALALRLPAAVGQAAaATIKMPSCECPTpvfsgVDPRLFRASLirFNEVSPWFA 246
                 689*************************************************99554444044433333322245665555555555589********* PP

        GRAS  93 fshltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfef 178
                 + + +aN  I  a+++       +++H++D+++s+G+QWp+Ll+aL+  p  + pps+R+T+ g++++       +        +L ++A+++++++ +
  Do008453.1 247 VPNALANGSIALAASTRgavtrpHQIHVVDIGVSHGVQWPTLLEALTRVPrgSTPPSVRLTVAGPAATPavpfsASPPGYDCSPQLLRYAKTINLDLAI 345
                 **********9999888667666788*********************76644889*********9776689998889999***************9998 PP

        GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleakl. 275
                     a +l++l  + + + pgE+++V+l+++l +        ++e+ +vL+ ++sl+P++vv++e ++   +++s + +f+  le+ ++++ds++a + 
  Do008453.1 346 VQ--APSLDTL--HGI-LTPGETVIVCLQFRLGHAI------AEEQVAVLRNIRSLNPELVVLAELDCGGrSDGSAASEFAARLEHLWTFLDSTAAAFk 433
                 76..4556655..455.799************9998......333568*******************998899*********************65551 PP

        GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslv.lgWkdrpLvsv 370
                 +r+++er+++E+e  +  +  + a +ga         e   +rl +aGF++++++ +a ++ak+llrk++  g+++     +sg++v l Wk++p+ ++
  Do008453.1 434 GRDADERRVMEAE--AGTALAATARRGAT---VGGGREALLARLAAAGFEEAAFGAEALETAKALLRKYD-GGWELVppsPSSGAAVgLRWKRQPVSFC 526
                 5666888888888..44455555555555...5566677789****************************.66777755566888889*********** PP

        GRAS 371 SaWr 374
                 S+Wr
  Do008453.1 527 SMWR 530
                 ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.967121507IPR005202Transcription factor GRAS
PfamPF035142.3E-54148530IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSNERRDQEP AAATGSSASD WLDESIAFLA ADLDLGLDAY GWLQASAAEQ QGIDSMVAET  60
LPPQVSTLPQ SSLGPVSTSV GSSPVEFGQP RKLKSPQHSR QRCPVGGGGG RGGPELDKGG  120
TSCNQKPSKK GSAKAGAATL NRDARWAEQL LNPCAVAIES GNLPRAQHLL YVLGELASFS  180
GEQNHRLAAH GLRALALRLP AAVGQAAAAT IKMPSCECPT PVFSGVDPRL FRASLIRFNE  240
VSPWFAVPNA LANGSIALAA STRGAVTRPH QIHVVDIGVS HGVQWPTLLE ALTRVPRGST  300
PPSVRLTVAG PAATPAVPFS ASPPGYDCSP QLLRYAKTIN LDLAIVQAPS LDTLHGILTP  360
GETVIVCLQF RLGHAIAEEQ VAVLRNIRSL NPELVVLAEL DCGGRSDGSA ASEFAARLEH  420
LWTFLDSTAA AFKGRDADER RVMEAEAGTA LAATARRGAT VGGGREALLA RLAAAGFEEA  480
AFGAEALETA KALLRKYDGG WELVPPSPSS GAAVGLRWKR QPVSFCSMWR PAQASTELTW  540
RGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-2714353129420Protein SHORT-ROOT
5b3h_E1e-2714353129420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008453.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801770.10.0nodulation-signaling pathway 1 protein-like
TrEMBLA0A1E5VA730.0A0A1E5VA73_9POAL; Nodulation-signaling pathway 1 protein
STRINGSi033320m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-68GRAS family protein