PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008442.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 299aa    MW: 33046 Da    PI: 6.6857
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008442.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.6e-1366110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
       Do008442.1  66 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 110
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-1660116IPR009057Homeodomain-like
PROSITE profilePS5129414.40461115IPR017930Myb domain
SMARTSM007172.7E-1065113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-665106IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1865113IPR006447Myb domain, plants
PfamPF002491.1E-1066110IPR001005SANT/Myb domain
CDDcd001676.60E-868111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVSMSSTPHP LDSSAPGAGG EGKQEEARRM RLREAAAPMA VPAPLGDEDD EGPTRVRKPY  60
TITRSRESWT EPEHDKFLEA LQLFDRDWKK IEAYVGSKTV IQIRSHAQKY FLKVQKNGTG  120
EHLPPPRPKR KAAHPYPQKA SKKALQVALP QQASHIMEQG CGTPMDTPTA ATDLSANDAF  180
PSWENDSVQH FSPRHTEGSG AANNYSSSIG SQSGTWPTSE ATEQLPALRA MPDFARVYSF  240
LGSIFDPETN GHLQKLKEMD LIDAETVLLL MKNLSINLTN PNFEEHRRLL SSNGASMDQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008442.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964289.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W36e-90RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A1E5W9F30.0A0A1E5W9F3_9POAL; Protein REVEILLE 6 (Fragment)
STRINGSi006883m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.29e-78MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]