PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008358.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 448aa    MW: 47213.6 Da    PI: 6.3548
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008358.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30199258159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 ++Dg++WrKYGqK+ kg+++pr+YYrCt a  Cpv+k+v+r+ ed +++++tYeg+Hnh+
  Do008358.1 199 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApACPVRKQVQRCLEDMSILVTTYEGTHNHP 258
                 58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-31184260IPR003657WRKY domain
SuperFamilySSF1182907.19E-27192260IPR003657WRKY domain
PROSITE profilePS5081127.726194260IPR003657WRKY domain
SMARTSM007741.6E-36199259IPR003657WRKY domain
PfamPF031062.6E-26200258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MVEATGAGDG DDNHSTMVQD EVSAMQEEME KMREENRMLR RVVDRTVRDY YELQMKLAAY  60
QQQPADEPKE PEVFLSLGAA AKTGGFPEPK RKEQQAVRRP SVGIDDTDDG KEDLGLSLSL  120
GASSSYEEAE KLEAVHDFDG ASVVGADGKA KGYALLESSK LGAPAASDLA AAGITSQSVN  180
PANRKTRVSV RVRCQGPTMN DGCQWRKYGQ KVAKGNPCPR AYYRCTVAPA CPVRKQVQRC  240
LEDMSILVTT YEGTHNHPLP VGATAMASTT SAAATFMLLS STNSSSITEA GGGSAATPYL  300
SPYLLNSTSH HSSASPLLSA PSSMPSAHGA ASGVQHLNLF GQSSMLAQQA PHLKYPWSSD  360
PSHGSSGGLV AGSKRPFWST GGDEKTTATL PDNVGAVMSD PSKFSVAIAA AINSFMGKDG  420
QVMSGKDGES SSSKSSNKWG VVESLPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-211992601777Probable WRKY transcription factor 4
2ayd_A5e-21186262176WRKY transcription factor 1
2lex_A5e-211992601777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632473e-99AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681574.10.0probable WRKY transcription factor 9
TrEMBLA0A1E5W6Z80.0A0A1E5W6Z8_9POAL; Putative WRKY transcription factor 9
STRINGSi016791m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.18e-51WRKY DNA-binding protein 9