PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do008239.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 1133aa MW: 124968 Da PI: 9.6441

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do008239.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	78.5	1.5e-24	561	707	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratk..sgyWk.atgkdkevlsk 95 p GfrF+Pt e v +yL +k+ +k++ +++++e+d y+++P+ L k++++ +++wyf s+r+++y+ g+r++r t+ +g+Wk +tg++k+ +++ Do008239.1 561 PLGFRFKPTLREQVEFYLLPKLLDKPTVPNDTVTEADAYECDPEILTKRYEEkgVDDNWYFLSPRSRRYPGGDRPSRRTAdnRGRWKpSTGQSKPGKNA 659 88**********************888799**********965544224559*************99655459889999999998 PP NAM 96 .....kgel.............vglkktLvfykgrapkgektdWvmheyr 127 k + + +tL++y g+ +k +kt+W+mhe + Do008239.1 660 gagnsK--AkkglekdrrvgavEFTENTLAYYVGEPKKETKTKWLMHELT 707 766541..1556677777777678899*******************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00784	2.6E-16	351	448	IPR013256	Chromatin SPT2
Pfam	PF08243	5.3E-11	359	447	IPR013256	Chromatin SPT2
SuperFamily	SSF101941	1.57E-27	558	742	IPR003441	NAC domain
PROSITE profile	PS51005	32.002	560	742	IPR003441	NAC domain
Pfam	PF02365	1.4E-13	561	707	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1133 aa Download sequence Send to blast
MRGYEYETDG YHRAVEDEYG DEYYDQDEYE EDGSGAGDEY AEEEEPLEGQ KEILELRERL 60 KEQIRRKAKA AAASAAGRSS SSHDRIPPTR DNKFGSFFGP SKPVISRRVI EERKSLKELH 120 STVSRDPRPS VVHRDMPSSS KVQNKGNGHQ HKQKIVNEVK RKAETLKDNR DYSFLLSDDA 180 DLSSSPKEKP AARSSMIQKA GREMHSAAKS KAPTSQPARF SNGYGSKNTL STQRHAEGRV 240 DSMRKEVFSN RERAVSRDNE RMHSVVRNGS NQASISRITS QKLPSKSPIA NKHPSKDLND 300 PALRKSSVAS RHEMDRPKSS QSRRMQSAGQ RPQHSSPGQR PLQSVQQRPQ QSLQSRRPQQ 360 PSRPISSNGI RDDHTKRKQV VKRRFDEDED EEDPLAMIRN MFGYDPRKYA GRDEDDSDME 420 ADFATIEREE KRSVAVRILE EINQEKRQIR FCPSDASSCF LFGTGPNLGR IGSINEGSSN 480 LVHVRVVVRL QSGWLTIGSC RIKKFMVSRI NKDSAVSLLP SSSFRTSINP KTSRDTSRVA 540 DMAGGDERPG GLGDDEKPKY PLGFRFKPTL REQVEFYLLP KLLDKPTVPN DTVTEADAYE 600 CDPEILTKRY EEKGVDDNWY FLSPRSRRYP GGDRPSRRTA DNRGRWKPST GQSKPGKNAG 660 AGNSKAKKGL EKDRRVGAVE FTENTLAYYV GEPKKETKTK WLMHELTIPE LEKQKDLNGA 720 TGEKPKDHML LNKYVMCRIY KSPLKKWREP EDDEASTSSA PACDEEVPTS SQSGATPESV 780 AGTSAPTPSS KRAGKRPAVE QPTGHANAPN KRASSQQTMM PPGPSGPPTY ANGGGGMRVP 840 VGVGAAGYYH GGVPGLPPLM QWPPVMHNSM QGPVQLQRPP AIYNSMQGPV QLQRPPLMYL 900 QNGQAPVQGT PVLKLYPPYR PAATVPSSLG PTMMMHPPNL AAGQMVRPPS LPLPPQQQQQ 960 MEDMKDQQQQ QQMEAMKHQQ RVYAQVAAAI KLSQRAQQDS ASCAGQQEIR PTASTQPACF 1020 DEGANHPAAT EVMAPLPQFL APHDFYPCSG VQQHQQSSSA IPATGVPPGG AAAPVEATLA 1080 AAVSARSKLS LPGDANKGSA MGNYYGYDNQ LHADLAAELA IIDGITSLTA SGG

Sequence ? help Back to Top

Protein Sequence Length: 1133 aa Download sequence Send to blast

MRGYEYETDG YHRAVEDEYG DEYYDQDEYE EDGSGAGDEY AEEEEPLEGQ KEILELRERL  60
KEQIRRKAKA AAASAAGRSS SSHDRIPPTR DNKFGSFFGP SKPVISRRVI EERKSLKELH  120
STVSRDPRPS VVHRDMPSSS KVQNKGNGHQ HKQKIVNEVK RKAETLKDNR DYSFLLSDDA  180
DLSSSPKEKP AARSSMIQKA GREMHSAAKS KAPTSQPARF SNGYGSKNTL STQRHAEGRV  240
DSMRKEVFSN RERAVSRDNE RMHSVVRNGS NQASISRITS QKLPSKSPIA NKHPSKDLND  300
PALRKSSVAS RHEMDRPKSS QSRRMQSAGQ RPQHSSPGQR PLQSVQQRPQ QSLQSRRPQQ  360
PSRPISSNGI RDDHTKRKQV VKRRFDEDED EEDPLAMIRN MFGYDPRKYA GRDEDDSDME  420
ADFATIEREE KRSVAVRILE EINQEKRQIR FCPSDASSCF LFGTGPNLGR IGSINEGSSN  480
LVHVRVVVRL QSGWLTIGSC RIKKFMVSRI NKDSAVSLLP SSSFRTSINP KTSRDTSRVA  540
DMAGGDERPG GLGDDEKPKY PLGFRFKPTL REQVEFYLLP KLLDKPTVPN DTVTEADAYE  600
CDPEILTKRY EEKGVDDNWY FLSPRSRRYP GGDRPSRRTA DNRGRWKPST GQSKPGKNAG  660
AGNSKAKKGL EKDRRVGAVE FTENTLAYYV GEPKKETKTK WLMHELTIPE LEKQKDLNGA  720
TGEKPKDHML LNKYVMCRIY KSPLKKWREP EDDEASTSSA PACDEEVPTS SQSGATPESV  780
AGTSAPTPSS KRAGKRPAVE QPTGHANAPN KRASSQQTMM PPGPSGPPTY ANGGGGMRVP  840
VGVGAAGYYH GGVPGLPPLM QWPPVMHNSM QGPVQLQRPP AIYNSMQGPV QLQRPPLMYL  900
QNGQAPVQGT PVLKLYPPYR PAATVPSSLG PTMMMHPPNL AAGQMVRPPS LPLPPQQQQQ  960
MEDMKDQQQQ QQMEAMKHQQ RVYAQVAAAI KLSQRAQQDS ASCAGQQEIR PTASTQPACF  1020
DEGANHPAAT EVMAPLPQFL APHDFYPCSG VQQHQQSSSA IPATGVPPGG AAAPVEATLA  1080
AAVSARSKLS LPGDANKGSA MGNYYGYDNQ LHADLAAELA IIDGITSLTA SGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-17	561	741	18	164	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-17	561	741	18	164	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-17	561	741	18	164	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-17	561	741	18	164	NO APICAL MERISTEM PROTEIN
4dul_A	3e-17	561	741	18	164	NAC domain-containing protein 19
4dul_B	3e-17	561	741	18	164	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do008239.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5W2H0	0.0	A0A1E5W2H0_9POAL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	2e-22	NAC domain containing protein 32