PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do008238.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 366aa MW: 40625.1 Da PI: 5.619

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do008238.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.4	9.4e-07	172	200	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 3 rahnerErrRRdriNsafeeLrellPk.a 30 ++h ErrR +++N+ f L++l+P+ Do008238.1 172 KNHVVSERRRQEKLNEMFLILKSLVPTiH 200 68999*********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.668	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.39E-8	172	224	No hit	No description
SuperFamily	SSF47459	1.44E-11	172	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-12	173	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-5	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MNTTVAFSRG CRRWGTRSNL TEQADNAIVL LDDLDDENAM ETMIDEGRHE LAGEVDCLFN 60 TNLEQITKEI DDFYALREEL DVQPLAESSW MMDSPYLVAA PEAKDAATQS VPGDSSHVTS 120 FRAWTMPRSD DWLAVPVIGE PQKLLKKVVS GGAWMNNGCE SAGRMAQESG SKNHVVSERR 180 RQEKLNEMFL ILKSLVPTIH GQSIHPWLLA ETVAYLRELE QKVQELESSR GHVARLAGET 240 MLGCHDNEIT GKRVSAAKRK KPSELNGNME REQEHHWVLS KDGASHVINV SVTGTEVLVQ 300 VQCRWKELLM ARVFDAIKNL HLVVLSVQAS TPNGLLGLKI QAQFASSSTV APGMIREALQ 360 KAISNS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MNTTVAFSRG CRRWGTRSNL TEQADNAIVL LDDLDDENAM ETMIDEGRHE LAGEVDCLFN  60
TNLEQITKEI DDFYALREEL DVQPLAESSW MMDSPYLVAA PEAKDAATQS VPGDSSHVTS  120
FRAWTMPRSD DWLAVPVIGE PQKLLKKVVS GGAWMNNGCE SAGRMAQESG SKNHVVSERR  180
RQEKLNEMFL ILKSLVPTIH GQSIHPWLLA ETVAYLRELE QKVQELESSR GHVARLAGET  240
MLGCHDNEIT GKRVSAAKRK KPSELNGNME REQEHHWVLS KDGASHVINV SVTGTEVLVQ  300
VQCRWKELLM ARVFDAIKNL HLVVLSVQAS TPNGLLGLKI QAQFASSSTV APGMIREALQ  360
KAISNS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do008238.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823475.1	1e-111	anthocyanin regulatory R-S protein-like isoform X2
Swissprot	P13027	4e-78	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	A0A1E5W2E8	0.0	A0A1E5W2E8_9POAL; Anthocyanin regulatory R-S protein
STRING	Si012401m	1e-108	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	1e-29	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]