PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do008213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 236aa MW: 26090.3 Da PI: 7.5057 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 58.4 | 2.5e-18 | 35 | 166 | 7 | 128 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkevlskkgelvgl 102 F+Pt++elv ++L+++++g + +++ ++ e+d + + Pw+L +++ +++ +fF+ r + + +r ++ +g W +t ++v++ + + + Do008213.1 35 FDPTEDELVLHFLRPQLRGFPPRVAGAVLEADPCGAAPWELLARYG-LREQGHFFAARGRGRPF--VVRRaVAGAGAWVhsSTRAGRSVTELGVVVRWR 130 9***********************999**************85553.35677******998876..455545689***844667789999978888999 PP NAM 103 kktLvfy..........kgrapkgektdWvmheyrl 128 + t+ fy gr+++ ++t+Wvm+ey++ Do008213.1 131 RVTFCFYargpagaagkGGRQQQQRSTEWVMEEYEI 166 99*****888777776447999999*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.305 | 29 | 192 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.23E-25 | 32 | 191 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-11 | 35 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGEDEEANLI AEEEAEDEVV DHHAAAGDLG VVDGFDPTED ELVLHFLRPQ LRGFPPRVAG 60 AVLEADPCGA APWELLARYG LREQGHFFAA RGRGRPFVVR RAVAGAGAWV HSSTRAGRSV 120 TELGVVVRWR RVTFCFYARG PAGAAGKGGR QQQQRSTEWV MEEYEITDPR CYRRCDEEGE 180 DHYWVLCRVS KSSKRPAVAP AAAKPASPPA KQRWRRLAEL ESDSGAKAKV SRPLRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do008213.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 6e-50 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816116.1 | 1e-108 | NAC domain-containing protein 18-like | ||||
TrEMBL | A0A1E5VMC9 | 1e-169 | A0A1E5VMC9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea04027.1.p | 7e-92 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13761 | 25 | 28 |