PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do008194.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 21952 Da PI: 9.1192 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.7 | 6.3e-09 | 105 | 153 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rWT+ E +llv+++ + G g+W++ +t Rt+ ++k++w+++l Do008194.1 105 SRWTAKEVKLLVKGISKCGVGRWSKLKKTYFktSVRTAVNIKDKWRNLL 153 59***************************998967************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.747 | 99 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-15 | 101 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-7 | 103 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-12 | 105 | 154 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.1E-7 | 106 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.85E-19 | 106 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MEQTELFWAP VQQEEEGLEG LFGDLQLILA SGTACGLQME NYQARDDEIQ QLLDEPRNEA 60 DLDECLSGGL HRSPLWDTAS HHQDTFFGGT PLGKGREFIT RKNNSRWTAK EVKLLVKGIS 120 KCGVGRWSKL KKTYFKTSVR TAVNIKDKWR NLLRAYQENV QKYTLLDLKP PLVEQIRKLA 180 AKHPYPKQRH S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do008194.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797447.1 | 1e-100 | uncharacterized protein LOC112877369 | ||||
TrEMBL | A0A1E5W3L2 | 1e-140 | A0A1E5W3L2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia01842.1.p | 5e-93 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5225 | 21 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-14 | TRF-like 6 |