PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008151.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 306aa    MW: 33043.5 Da    PI: 4.7177
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008151.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.64.4e-2033922486
    trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                +++ +p+W++v++++r++g+er+p+qC+++w+nl+++ykkike+e+     + s+ p f  ++
  Do008151.1 33 AAALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIKEWERAA---AASREPSFWAMR 92
                556689****************************************86...333557777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-93991No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVEGRGGRGG RGRVAAAAAA AAASASGGEA AAAAALEPKW AAVAEYCRRH GVERGPVQCR  60
KRWSNLAGDY KKIKEWERAA AASREPSFWA MRNDARRERR LPGFFDREVY DILEGRGRAI  120
LAGRSAGNAA EEEEAVAAAR VEEEKEAGPA EAVFDSGRPA TEEALFSEDE EEEEEEAPAV  180
APPPPLPPVI AVPVSEKPEA SRQQQSAQQG TSKDKQSEQS AERDAPAQQG GQKRPRPDEE  240
AGEGTTDLQS KLIEILDRNS RMVAAQLEVQ NQNCELDREQ RKDQANSLVL VLGRLADALG  300
RIADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232236KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952586.11e-156trihelix transcription factor ASR3
TrEMBLA0A1E5W2Z80.0A0A1E5W2Z8_9POAL; Trihelix transcription factor ASR3
STRINGSi017674m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-62Trihelix family protein