PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do008103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 393aa MW: 42089.7 Da PI: 4.8539 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 129 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdps+ r++lg++ taeeAa+a++a ++k++g Do008103.1 129 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 178 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.38E-31 | 129 | 187 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 129 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 129 | 186 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-38 | 129 | 192 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-22 | 129 | 186 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-11 | 130 | 141 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.6E-12 | 130 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MCGGAILSGF IRPSGAAAAA AAKKKQQQQA RRVTADLLWP GLGRKGALGE EDFEADFRKF 60 ERTLGEYVYA DAAGGDDDDE VQEVPPPDFA FATAAKAAPP PAADGVMTPK PVQPDESNAT 120 SAKRNRKNQY RGIRQRPWGK WAAEIRDPSK GVRVWLGTYN TAEEAARAYD AEARKIRGKK 180 AKVNFPEGPD AQKSVPKPTA ANATKLAPSP KTCADEAFNN LNNGDNDLFA MFAFSDSKVP 240 VKPAEGASFL PAVKPLVPTK RSATNMLSDQ SSNSYGSSDF GWDDETMTSD YTSVFAPNNA 300 VPAYMDPAYL QGEASKRMRN NYGVAVAQGN GAPNLAQGMS GFNPEMNYLP TPYVESSSET 360 SMDSLLQNDT PQNGASNGDL WSLDELLMAA GAY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-20 | 129 | 186 | 5 | 63 | ATERF1 |
3gcc_A | 7e-20 | 129 | 186 | 5 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 258 | 265 | TKRSATNM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do008103.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800946.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A1E5WJY8 | 0.0 | A0A1E5WJY8_9POAL; Ethylene-responsive transcription factor 1 | ||||
STRING | Pavir.J01991.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11200 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 8e-27 | related to AP2 12 |