PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008082.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 685aa    MW: 73391 Da    PI: 5.1577
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008082.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08479500526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+++  +G C +GdrCkF+H+
  Do008082.1 479 ECHNYKNNGMCIRGDRCKFSHV 500
                 6********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.971420447IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-4421446IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5422445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549449476IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015449475IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5450474IPR000571Zinc finger, CCCH-type
SMARTSM003560.023477501IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.53479502IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-5479500IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4480499IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MEDALAPSPA APPPAPIAAA AVLNRRRSHL DSASYRTLSR LFSHCLHLHP SPREGTAPPE  60
AEPAAAKPIG IGGDSGDYSQ VPGGANFDRL KDVEKEAADA GGPLLHGTVS PAREQPAAAN  120
PTGDPCEAQA PQCLLQDVDE VVALESTCGN TGAGGEESGI GAELVVAEDD ALKLVTACLE  180
MTEIDESVEG AVGDDDGQLL LDAMMTNFTG LIDDVGDGVI PAQTCVVSGG ERQNSKASED  240
SKQSGGGIEN RESVSNLDCE LNNDGGFEEG EIEGYFQDLD SEESGDSEFG DDDAEDEKLG  300
GDSVSRGSGA NESCDHGTRF ENLHSTPEII GNGHLIFDKH PNVRGDAQIS VTRAQAVSYD  360
EVVDWNETPL PDNEAPNSGK KRKRPLTEER KAKKKKNSRM KRAQKRIADG VKRPKLEPVI  420
KPKKPCRFYD HGKCQQGNKC KFSHDFTPST KSMPCKHFAC GSCLKGDDCP YDHELSKYEC  480
HNYKNNGMCI RGDRCKFSHV MRTTEGTPTQ GAKTSDASLA YEKTNLREHT SSQKTSTVRN  540
VEPVSSAPTK QQCSILKNLA GFSINSQNVS NRIPKGVQFL PIGKSGSNLS SPHPDALSIE  600
KHLNANGTQH QYLGGHEAER QKIVKQNGQA LLDEKNSSNE ATTQPCLDPK KASLPITSTA  660
TSVHTQHEVS EASRILQEFL FGAGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381395RKRPLTEERKAKKKK
2382395KRPLTEERKAKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008082.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817940.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_025817941.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_025817942.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A1E5UVI40.0A0A1E5UVI4_9POAL; Zinc finger CCCH domain-containing protein 7
STRINGPavir.Eb02489.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]