PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do008078.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 447aa    MW: 47656.7 Da    PI: 8.3495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do008078.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-0682104123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cgk F r  nL+ H r H
  Do008078.1  82 FVCEICGKGFQRDQNLQLHRRGH 104
                 89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-781104No hitNo description
PROSITE profilePS5015711.61482104IPR007087Zinc finger, C2H2
SMARTSM003550.01282104IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-582104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SMARTSM00355130125155IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.07E-7155180No hitNo description
SMARTSM00355160160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MFHHHHHQQE LLQDQAEAAD QQESSMSNLT SSASGGPNAP PPPPPAPPAS GNKRKRSLPG  60
NPDPDAEVVA LSPATLMATN RFVCEICGKG FQRDQNLQLH RRGHNLPWKL KQRGTGKEAQ  120
RKKVYVCPEA SCVHHDPARA LGDLTGIKKH FFRKHGEKKW KCDKCSKKYA VHSDWKAHSK  180
ICGTREYKCD CGTIFSRRDS FITHRAFCDA LTEESAKAIG LNAMAAAAAA PADHHPLLFS  240
PPPQVMQHQV HDLTAMQEVM QPPQAQQQQQ QRCNYAMKTE MPPWPAMTYD HHAHPLLQPL  300
CNANATAQSS ATSAPPPQML AASAHLSATA LLQKAAQMGA TIGGAGAHYT QMAGPVTSAP  360
GSATFGLGLP GGLNAQQPVD GVMGGLARTA SHGRSGEDGG AGAGAGGGGD GMTRDFLGLR  420
AFSHHDILGL AGFDSSCMGC YEPQQNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34156222369Zinc finger protein JACKDAW
5b3h_F3e-34156222369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo008078.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569260.0EU956926.1 Zea mays clone 1577561 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969529.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-114IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1E5UV960.0A0A1E5UV96_9POAL; Protein indeterminate-domain 9
STRINGSi001287m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.19e-93C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]