PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do007988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GATA | ||||||||
Protein Properties | Length: 149aa MW: 16264.4 Da PI: 9.1458 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 27.3 | 5.1e-09 | 95 | 114 | 1 | 20 |
GATA 1 CsnCgttkTplWRrgpdgnk 20 C+ C++t+Tp+WR+gp g++ Do007988.1 95 CVECRATTTPMWRSGPTGPR 114 ******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 9.816 | 89 | 118 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.6E-6 | 93 | 112 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.7E-6 | 95 | 114 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MRRHPTHRIH SFISLSLPPS LPRNYSLLST TRFQGTEQPT DQTKNQNSPS DPVPNPATDR 60 ACCRLFPPPT PPLMGSADRS EIDGIVVAEK GARSCVECRA TTTPMWRSGP TGPRVSSSSS 120 SPPSVLVLRC SVLFVFARIR FDQVGDSDS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do007988.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040389 | 3e-44 | BT040389.1 Zea mays full-length cDNA clone ZM_BFc0088I05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5W4W1 | 1e-103 | A0A1E5W4W1_9POAL; Uncharacterized protein | ||||
STRING | Si004417m | 2e-36 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6721 | 28 | 54 |