PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do007897.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 182aa MW: 20707.1 Da PI: 8.605 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.1 | 1.7e-53 | 12 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvka..eek..ewyfFskrdkkyatgkrknratksgyWkatgkd 89 +ppGfrFhPt+eelv +yL++kv++++ + ++i+evd+y++ePwdL++ k + +e+ ewyfFs +d+ky++g+r+nrat++g+Wkatg+d Do007897.1 12 VPPGFRFHPTEEELVGYYLARKVAASHksQTDLDIIQEVDLYRIEPWDLQErcssK--HggGEQaaEWYFFSYKDRKYPSGTRTNRATAAGFWKATGRD 108 69********************9988854333478**************9535442..13433346********************************* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+vls+ ++e++g++ktLvfykgrap+g+ktdW+mheyrl Do007897.1 109 KPVLSRsSREVIGMRKTLVFYKGRAPHGSKTDWIMHEYRL 148 *****977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-52 | 9 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.067 | 12 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-28 | 13 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEQAAEEESC CVPPGFRFHP TEEELVGYYL ARKVAASHKS QTDLDIIQEV DLYRIEPWDL 60 QERCSSKHGG GEQAAEWYFF SYKDRKYPSG TRTNRATAAG FWKATGRDKP VLSRSSREVI 120 GMRKTLVFYK GRAPHGSKTD WIMHEYRLQL QANHHAPAQA STSSSQFTTI HSTTSQQCNK 180 AT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-50 | 2 | 148 | 6 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do007897.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034678 | 7e-89 | BT034678.1 Zea mays full-length cDNA clone ZM_BFb0011B16 mRNA, complete cds. | |||
GenBank | JN634080 | 7e-89 | JN634080.1 Zea mays secondary wall NAC transcription factor 4 mRNA, complete cds. | |||
GenBank | KJ727641 | 7e-89 | KJ727641.1 Zea mays clone pUT5568 NAC transcription factor (NAC103) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131327.1 | 2e-86 | uncharacterized protein LOC100192643 | ||||
Refseq | XP_008667100.1 | 2e-86 | secondary wall NAC transcription factor 4 isoform X1 | ||||
Refseq | XP_020402965.1 | 2e-86 | secondary wall NAC transcription factor 4 isoform X1 | ||||
Swissprot | O65508 | 3e-71 | NAC76_ARATH; NAC domain-containing protein 76 | ||||
TrEMBL | A0A1E5WJP1 | 1e-135 | A0A1E5WJP1_9POAL; NAC domain-containing protein 76 | ||||
STRING | AC212859.3_FGP008 | 8e-86 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2594 | 37 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36160.1 | 3e-72 | NAC domain containing protein 76 |
Publications ? help Back to Top | |||
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