PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007897.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 182aa    MW: 20707.1 Da    PI: 8.605
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007897.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.11.7e-53121481128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvka..eek..ewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                 +ppGfrFhPt+eelv +yL++kv++++   +  ++i+evd+y++ePwdL++    k  +  +e+  ewyfFs +d+ky++g+r+nrat++g+Wkatg+d
  Do007897.1  12 VPPGFRFHPTEEELVGYYLARKVAASHksQTDLDIIQEVDLYRIEPWDLQErcssK--HggGEQaaEWYFFSYKDRKYPSGTRTNRATAAGFWKATGRD 108
                 69********************9988854333478**************9535442..13433346********************************* PP

         NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 k+vls+ ++e++g++ktLvfykgrap+g+ktdW+mheyrl
  Do007897.1 109 KPVLSRsSREVIGMRKTLVFYKGRAPHGSKTDWIMHEYRL 148
                 *****977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-529155IPR003441NAC domain
PROSITE profilePS5100553.06712173IPR003441NAC domain
PfamPF023653.2E-2813148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEQAAEEESC CVPPGFRFHP TEEELVGYYL ARKVAASHKS QTDLDIIQEV DLYRIEPWDL  60
QERCSSKHGG GEQAAEWYFF SYKDRKYPSG TRTNRATAAG FWKATGRDKP VLSRSSREVI  120
GMRKTLVFYK GRAPHGSKTD WIMHEYRLQL QANHHAPAQA STSSSQFTTI HSTTSQQCNK  180
AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-5021486140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007897.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0346787e-89BT034678.1 Zea mays full-length cDNA clone ZM_BFb0011B16 mRNA, complete cds.
GenBankJN6340807e-89JN634080.1 Zea mays secondary wall NAC transcription factor 4 mRNA, complete cds.
GenBankKJ7276417e-89KJ727641.1 Zea mays clone pUT5568 NAC transcription factor (NAC103) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131327.12e-86uncharacterized protein LOC100192643
RefseqXP_008667100.12e-86secondary wall NAC transcription factor 4 isoform X1
RefseqXP_020402965.12e-86secondary wall NAC transcription factor 4 isoform X1
SwissprotO655083e-71NAC76_ARATH; NAC domain-containing protein 76
TrEMBLA0A1E5WJP11e-135A0A1E5WJP1_9POAL; NAC domain-containing protein 76
STRINGAC212859.3_FGP0088e-86(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.13e-72NAC domain containing protein 76
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]