PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007826.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 389aa    MW: 40323.8 Da    PI: 9.1379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007826.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-1675120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
       Do007826.1  75 RGHWRPAEDAKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 120
                      899*****************************.***********996 PP
2Myb_DNA-binding52.11.5e-16128170246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
       Do007826.1 128 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 170
                      689******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7870121IPR017930Myb domain
SMARTSM007176.1E-1474123IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-2775168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-2676128IPR009057Homeodomain-like
PfamPF139219.8E-1678138No hitNo description
CDDcd001674.27E-1378119No hitNo description
PROSITE profilePS5129424.91122176IPR017930Myb domain
SMARTSM007174.9E-13126174IPR001005SANT/Myb domain
CDDcd001679.75E-11129169No hitNo description
Gene3DG3DSA:1.10.10.605.0E-20129175IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MPCSSPAPTT WLLRVASAAD QASSSSSSKG GGRVLTAGTT TMDTGATAAG GGCAGGNAAD  60
HQESSSSGQS RLAARGHWRP AEDAKLRELV ALYGPQNWNL IAEKLDGRSG KSCRLRWFNQ  120
LDPRISKRPF SDEEEERLMA AHRFYGNKWA MIARLFPGRT DNAVKNHWHV IMARKYREQS  180
TAYRRRKLNQ AVQRKLEAAA SAAVVAMPPA GGAPGDASPV AGHHHHLLAA AAAAHDAAYG  240
FAADPYGFSF RHYGSFPFPA GAASAEDPPP PPPPVCLFPG PSGGAASHAD RRLPWPSSDA  300
GTGAGRGVGG SRYGEPPLLL PVPGGWIDGI GGGGHHEPHH QFVLDRDGGA AAAFDGTATR  360
QGGAGAHFDG AAAAAPSPAF IDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-33751757107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419830.0BT041983.1 Zea mays full-length cDNA clone ZM_BFb0095C08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821466.11e-171transcription factor CSA-like
TrEMBLA0A1E5VR830.0A0A1E5VR83_9POAL; Transcription factor MYB44
STRINGGRMZM2G428555_P031e-157(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-70myb domain protein 105