PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007811.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 661aa    MW: 68048.1 Da    PI: 7.4132
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007811.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-092675445
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwq 45
                     W t+E++ll++av+++G+ +W+++a +++         ++t+  c++r++
       Do007811.1 26 WGTWEELLLACAVQRHGTASWDSVAMEVQsrcpaaaaDRLTPTGCRLRFR 75
                     *****************************666666666666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00352280IPR001005SANT/Myb domain
PfamPF002494.3E-92675IPR001005SANT/Myb domain
CDDcd001673.13E-42658No hitNo description
Gene3DG3DSA:1.20.920.101.9E-13293437IPR001487Bromodomain
SMARTSM002976.4E-8304418IPR001487Bromodomain
SuperFamilySSF473703.79E-13305418IPR001487Bromodomain
PfamPF004391.1E-8320402IPR001487Bromodomain
PROSITE profilePS5001410.07323391IPR001487Bromodomain
CDDcd043693.96E-11326413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MTARSDDPGV SPGTSAAAAA AGGEIWGTWE ELLLACAVQR HGTASWDSVA MEVQSRCPAA  60
AADRLTPTGC RLRFRLLHRR FAAGAENGGG GGGDGDEDPD ASAADGWVEE LRKLRVAELR  120
REVERYDLSI GSLQSKVKRL KEERERSISG EAIPAVKEDD EEEEEPATGK GSLEDDAPGG  180
EDRVSGGESW RSCKESNSSD LKRPAHDAAT ASAAGDDGGA AASEEGEEEE AAADELLAVK  240
REEASGESVA GSKEADKESS DVQSSASPSR RCEREEDGVG GGGEEAEAET EEASASPSPS  300
PSAAAALPAA EAEALLAFLE SVRSSKPGSV FERRLESQDD AKYRSTIRRH VDLETVRSKL  360
EGGGGGGGAC YGSASEFYRD LLLLCANALV FFPLGSPEHA AAGRTRALVS KQMSASLHKQ  420
DQPGISSGKA TAPASKKAKA EADVGSLLEK TAPIIVCRKR SSIAKAAAAA AKEEKVDKAE  480
TDKEEENEVG KKKAGVAKDK AARGPRTNKT RAGAAARKAA APNQKTGDNG GSDSDAPPAE  540
ATKKPDKKGG GPAVGSGAGV AKKRNAVNFL NRMKQGSAPS TERVSLLETL KLSAAAEQKK  600
AGKGGDGKKE PAGGSGSKRG KGTGAPPGRR IGRPPKRAAA PPSPPPAKRA RGGGVKRGGK  660
K
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007811.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820863.10.0uncharacterized protein LOC112896947
TrEMBLA0A1E5VD370.0A0A1E5VD37_9POAL; Uncharacterized protein
STRINGPavir.Fb01943.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31812648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.16e-22DNA-binding bromodomain-containing protein