PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do007746.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 1061aa    MW: 116352 Da    PI: 5.8986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do007746.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.24e-05281326632
                 HHHHHHHHHHHHHHHHHHHCTSCC.C.................... CS
         HLH   6 nerErrRRdriNsafeeLrellPk.as..................k 32 
                 +++Er RR ri +++ +L+ l+P+ +                    
  Do007746.1 281 SIAERERRTRISEKLRKLQALVPNmDKavtaecvltkfensrqalL 326
                 689********************97755555555555555555550 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.53275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.34E-5278315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00201279310No hitNo description
Gene3DG3DSA:4.10.280.106.5E-5280363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF578502.99E-29507591No hitNo description
PROSITE profilePS5169840.02515589IPR003613U box domain
Gene3DG3DSA:3.30.40.102.0E-32516588IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF045646.2E-20517586IPR003613U box domain
SMARTSM005049.8E-32519582IPR003613U box domain
CDDcd001620.00851522558No hitNo description
Gene3DG3DSA:1.25.10.104.3E-42653654IPR011989Armadillo-like helical
Gene3DG3DSA:1.25.10.104.3E-42690981IPR011989Armadillo-like helical
CDDcd000209.02E-6693811No hitNo description
SuperFamilySSF483711.98E-28703976IPR016024Armadillo-type fold
SMARTSM001857.3728772IPR000225Armadillo
SMARTSM0018517773812IPR000225Armadillo
SMARTSM0018565813856IPR000225Armadillo
SMARTSM00185140857896IPR000225Armadillo
SMARTSM00185140897938IPR000225Armadillo
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1061 aa     Download sequence    Send to blast
MNPPPQRGRS RYGGGSGQQQ QFPFVVDPTE EPGAAVRAFF PAPEAPSGEP PSSSDRAPPG  60
QQRYGHGEIS LGHGQGMHRY HQFGVEGKRQ DGGPSAASLP RHSSSPPGFF SSPVVDNDIL  120
CVSSMEVGFP SERAGVGVGG EVHHAMSSYH KKMKSPMNLA GQVTLSHISE DGIPDLTNNV  180
HGIGLSEENI TANSVSRSFS SGSNGFSIGP WEDSNSIVFS NPASKAGIHN NDDIIASLSN  240
YELQFGATKE TAGMDKYLQM QQDQVPFRVR AKRGCATHPR SIAERERRTR ISEKLRKLQA  300
LVPNMDKAVT AECVLTKFEN SRQALLESIH QVEETIPEAI NSKITEIAQE LDKAVFALDQ  360
SEKQVGDEVN HLIQNESKFN GFLDENELEF LRQIAFRVGI ASPTAALTER RALRRLLERA  420
HAEEDLKKES IASYLLHLMR KYPNIFKSDM TEITNSQCSS PSCSSNSLSS SIGLHRSLSS  480
SIDLHGNCQA LERQLPRVSS FSLKQIKGLS GSMPLPPEEL RCPISLQLMY DPVVIASGQT  540
YERACIEKWF DSGNTTCPKT RQQLSQLSLT PNYGIKGLIA SWCERNGVLV PSAPPESPKL  600
KYLRISSLKS STCLVTNGVN TVLFEDTGAK DDAKSDSAVA VEKFSRQNSR ETTSKIRVDE  660
VSRLNSGEAT SEICEVEDSL MKCSHQNSKE TVSEICEEWL HVLNKSNSES MDEQYRLVEQ  720
IRLLLKSDDE LRDYAGANGI TEPLIHFLKM AIFREDVQSQ EVGTMALFNL AVSNDRNKRE  780
LLSAGVIPLI EQMIQKPETC EAAIAMYLNL SCISEAQAVI GSSDAISFLI EALREDGSRS  840
DNCRLDALLT LYNLSLHAHN IPFLMDSGII ESLRTVLAPS STWTDKALAV LLNLALTRGG  900
KKEIAADADM VGAIVLLLDN GEPGEQEKAV SCLYVICSGD EGSSQTVLQE GVIPALVSVT  960
ANGTARARDK AQRLLRLFRE QRQRELEEMQ PRVELNEVAS QAAAAQQQQQ HEEEEEEMVL  1020
AVTPAAASKP SGGGKKPRLP RSGSRRFTKA FTCLLKKWSL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1t1h_A3e-26517588677armadillo repeat containing protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo007746.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976021.20.0U-box domain-containing protein 6
TrEMBLA0A3L6Q3P90.0A0A3L6Q3P9_PANMI; RING-type E3 ubiquitin transferase
STRINGSi009362m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-22bHLH family protein