PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do007743.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 181aa MW: 19865.3 Da PI: 5.0286 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 10 | 59 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+Wv+eIr p g ++r++lg+f +ae+Aa a++ a+++l+g Do007743.1 10 QYRGVRKRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 59 69****999.**********8...325*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-21 | 10 | 67 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-31 | 10 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.512 | 10 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-35 | 10 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.88E-30 | 11 | 67 | No hit | No description |
Pfam | PF00847 | 3.3E-11 | 11 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-10 | 11 | 22 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-10 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MSSSSSQQQQ YRGVRKRKWG KWVSEIRQPG TKTRIWLGSF ESAEMAAVAH DVAALRLRGR 60 DAQLNFPGCV AWLPRPASTH PADVRAAAAE AADRVRCDPA LLVLQQQAAR FHDHDGFEIG 120 AGPVVDLVGS DEEFELDLDS PRLWAEMAEA MLLDPPGWAT SVGDAEVAQQ CWSHGSLWDA 180 C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-17 | 6 | 67 | 1 | 63 | ATERF1 |
3gcc_A | 4e-17 | 6 | 67 | 1 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do007743.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU958135 | 1e-161 | EU958135.1 Zea mays clone 1674836 dehydration-responsive element-binding protein 1D mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975709.1 | 2e-97 | ethylene-responsive transcription factor ERF027-like | ||||
TrEMBL | A0A1E5W488 | 1e-128 | A0A1E5W488_9POAL; Uncharacterized protein | ||||
STRING | LPERR04G10650.1 | 5e-66 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-25 | ERF family protein |